C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412050 CPEB3-001 ENSG00000107864 9606 - 10:92046692-92243246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverOvaryPlacentaTestisENST00000412050
Transcript ID Bladder Brain Breast Kidney Liver Ovary Placenta Testis
ENST00000412050 0.179±0.00 5.486±0.00 0.220±0.05 0.414±0.00 0.426±0.00 0.130±0.00 0.080±0.03 1.228±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018R CIL_00018R_0001 CGP 10:91923769-92291087
CIL_00018Q CIL_00018Q_0001 CGP 10:92046692-92353964

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000900 ISS translation repressor activity, nucleic acid binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0006412 ISS translation
GO:0007616 ISS long-term memory
GO:0008135 ISS translation factor activity, nucleic acid binding
GO:0017148 IDA negative regulation of translation
GO:0030014 IDA CCR4-NOT complex
GO:0030425 ISS dendrite
GO:0035613 ISS RNA stem-loop binding
GO:0035925 ISS mRNA 3'-UTR AU-rich region binding
GO:0043005 ISS neuron projection
GO:0044822 IDA poly(A) RNA binding
GO:0045202 ISS synapse
GO:0045727 ISS positive regulation of translation
GO:0048167 ISS regulation of synaptic plasticity
GO:0060213 IDA positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060998 ISS regulation of dendritic spine development
GO:0060999 ISS positive regulation of dendritic spine development
GO:0061158 IDA 3'-UTR-mediated mRNA destabilization
GO:0071230 ISS cellular response to amino acid stimulus
GO:0097440 ISS apical dendrite
GO:1900153 IDA positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:1900248 ISS negative regulation of cytoplasmic translational elongation
GO:1900365 ISS positive regulation of mRNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126188 Cpeb3-003 protein_coding Mus_musculus 0 4039
ENSMUST00000123727 Cpeb3-006 protein_coding Mus_musculus 0 3072
ENSMUST00000124158 Cpeb3-008 protein_coding Mus_musculus 0 2702
ENSMUST00000154376 Cpeb3-005 protein_coding Mus_musculus 0 2610
ENSMUST00000079754 Cpeb3-001 protein_coding Mus_musculus 0 2610
ENSMUST00000136286 Cpeb3-007 protein_coding Mus_musculus 0 2567
ENSMUST00000132580 Cpeb3-004 protein_coding Mus_musculus 0 2196
ENSMUST00000126781 Cpeb3-002 protein_coding Mus_musculus 0 2109
ENSMUST00000133988 Cpeb3-010 protein_coding Mus_musculus 0 754
ENSMUST00000166713 Cpeb2-201 protein_coding Mus_musculus 0 686
ENSMUST00000169035 Cpeb2-202 protein_coding Mus_musculus 0 686
ENSMUST00000114066 Cpeb2-002 protein_coding Mus_musculus 0 686
ENSMUST00000114065 Cpeb2-001 protein_coding Mus_musculus 0 686
ENSMUST00000020543 Cpeb4-201 protein_coding Mus_musculus 0 582
ENSMUST00000155278 Cpeb4-002 protein_coding Mus_musculus 0 582
ENSMUST00000109412 Cpeb4-001 protein_coding Mus_musculus 0 582
ENSMUST00000142973 Cpeb3-011 protein_coding Mus_musculus 0 460
ENSMUST00000131917 Cpeb3-009 protein_coding Mus_musculus 0 425
ENSMUST00000128642 Cpeb3-012 protein_coding Mus_musculus 0 335
ENSDART00000084354 cpeb3-001 protein_coding Danio_rerio 0.000000001 71

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