C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic polyadenylation element binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039652 Cpeb3 10090 - 19:37021291-37208601 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079754 Cpeb3-001 37021291-37207462 protein_coding
  ENSMUST00000123727 Cpeb3-006 37024639-37198109 protein_coding
  ENSMUST00000124158 Cpeb3-008 37021297-37174095 protein_coding
  ENSMUST00000126188 Cpeb3-003 37022970-37207473 protein_coding
  ENSMUST00000126781 Cpeb3-002 37054062-37207508 protein_coding
  ENSMUST00000128642 Cpeb3-012 37174688-37175216 protein_coding
  ENSMUST00000131917 Cpeb3-009 37174623-37208601 protein_coding
  ENSMUST00000132580 Cpeb3-004 37023935-37207293 protein_coding
  ENSMUST00000133988 Cpeb3-010 37174437-37178017 protein_coding
  ENSMUST00000136286 Cpeb3-007 37021879-37207462 protein_coding
  ENSMUST00000142973 Cpeb3-011 37174593-37176056 protein_coding
  ENSMUST00000154376 Cpeb3-005 37021879-37176063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079754ENSMUST00000123727ENSMUST00000124158ENSMUST00000126188ENSMUST00000126781ENSMUST00000132580ENSMUST00000136286ENSMUST00000154376
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079754 N/A N/A 0.545±0.20 1.640±0.00 N/A N/A N/A N/A 0.708±0.18 N/A 1.792±0.20 N/A 0.245±0.06 N/A
ENSMUST00000123727 N/A 2.546±0.00 0.675±0.10 N/A N/A 0.704±0.23 N/A N/A 0.617±0.24 1.995±0.00 N/A 0.875±0.00 N/A 14.156±3.39
ENSMUST00000124158 0.589±0.14 N/A 0.979±0.05 N/A 1.287±0.00 0.615±0.00 4.359±0.74 4.267±2.37 0.487±0.12 0.803±0.10 6.791±1.63 1.448±0.85 0.245±0.03 0.500±0.00
ENSMUST00000126188 2.831±1.25 1.498±0.00 0.414±0.00 1.407±0.00 3.417±0.38 0.347±0.13 7.870±0.66 3.912±0.84 0.551±0.19 1.539±0.24 N/A 1.091±0.25 0.157±0.02 N/A
ENSMUST00000126781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.087±5.83
ENSMUST00000132580 N/A 2.830±0.13 N/A N/A 0.869±0.00 0.554±0.19 N/A N/A 0.336±0.03 0.649±0.00 N/A 3.280±0.91 0.481±0.00 4.086±0.00
ENSMUST00000136286 0.550±0.06 N/A N/A N/A 0.890±0.00 0.703±0.18 N/A 1.050±0.00 0.988±0.43 1.127±0.68 N/A N/A 0.194±0.00 N/A
ENSMUST00000154376 N/A N/A N/A N/A N/A 0.528±0.00 N/A N/A 0.371±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018R CIL_00018R_0002 CGP 19:36926079-37208601
CIL_00018Q CIL_00018Q_0002 CGP 19:37021291-37222139

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000900 IDA translation repressor activity, nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006412 IDA translation
GO:0007616 IMP long-term memory
GO:0008135 IDA translation factor activity, nucleic acid binding
GO:0017148 IMP:IDA negative regulation of translation
GO:0030014 ISS CCR4-NOT complex
GO:0030425 IDA dendrite
GO:0035613 IDA RNA stem-loop binding
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0043005 IDA neuron projection
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IDA synapse
GO:0045727 IDA positive regulation of translation
GO:0048167 IMP regulation of synaptic plasticity
GO:0060213 ISS positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060998 IMP regulation of dendritic spine development
GO:0060999 IDA positive regulation of dendritic spine development
GO:0061158 ISS 3'-UTR-mediated mRNA destabilization
GO:0071230 IDA cellular response to amino acid stimulus
GO:0097440 IDA apical dendrite
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:1900248 IDA negative regulation of cytoplasmic translational elongation
GO:1900365 IDA positive regulation of mRNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060103 cpeb3 cytoplasmic polyadenylation element binding protein 3 protein_coding Danio_rerio
ENSG00000107864 CPEB3 cytoplasmic polyadenylation element binding protein 3 protein_coding Homo_sapiens

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