C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 93
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079961 Nup93-201 ENSMUSG00000032939 10090 + 8:94214597-94314857 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079961 9.222±2.85 4.050±0.56 11.752±0.38 14.518±5.19 5.966±1.67 7.102±0.75 5.122±0.42 4.177±0.77 11.940±11.29 7.629±1.13 3.848±0.32 10.486±2.61 23.100±12.21 6.470±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000450 CIL_000450_0003 CGP 8:94214597-94366213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 ISS nuclear pore
GO:0015031 IEA protein transport
GO:0017056 ISS structural constituent of nuclear pore
GO:0031965 ISS nuclear membrane
GO:0034399 ISS nuclear periphery
GO:0051028 IEA mRNA transport
GO:0051292 ISS nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308159 NUP93-001 protein_coding Homo_sapiens 0 3338
ENST00000542526 NUP93-004 protein_coding Homo_sapiens 0 2911
ENST00000562496 NUP93-021 protein_coding Homo_sapiens 0 577
ENST00000563405 NUP93-008 protein_coding Homo_sapiens 0 427
ENST00000563437 NUP93-012 retained_intron Homo_sapiens 0 536
ENST00000563465 NUP93-010 retained_intron Homo_sapiens 0 472
ENST00000563858 NUP93-023 protein_coding Homo_sapiens 0 797
ENST00000564278 NUP93-009 retained_intron Homo_sapiens 0 568
ENST00000564887 NUP93-003 protein_coding Homo_sapiens 0 2900
ENST00000566315 NUP93-020 protein_coding Homo_sapiens 0 627
ENST00000566678 NUP93-013 protein_coding Homo_sapiens 0 490
ENST00000567641 NUP93-018 protein_coding Homo_sapiens 0 645
ENST00000568656 NUP93-019 protein_coding Homo_sapiens 0 708
ENST00000569322 NUP93-011 protein_coding Homo_sapiens 0 307
ENST00000569842 NUP93-002 protein_coding Homo_sapiens 0 3022
ENST00000569863 NUP93-022 protein_coding Homo_sapiens 0 675

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