C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 27 (fatty acid transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080065 Slc27a4-001 ENSMUSG00000059316 10090 + 2:29802634-29817522 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080065 17.380±1.82 23.502±1.20 7.102±0.76 14.142±5.43 15.376±4.72 34.507±2.43 5.689±0.78 16.706±5.40 5.829±5.54 7.076±1.89 2.368±0.35 19.398±6.95 6.012±3.63 1.428±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E7 CIL_0007E7_0002 CGP 2:29787493-29817522
CIL_0007EA CIL_0007EA_0002 CGP 2:29802634-29845002

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000038 IDA very long-chain fatty acid metabolic process
GO:0000166 IEA nucleotide binding
GO:0001579 IDA medium-chain fatty acid transport
GO:0001676 IDA long-chain fatty acid metabolic process
GO:0004467 IDA long-chain fatty acid-CoA ligase activity
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005886 TAS plasma membrane
GO:0005902 IDA microvillus
GO:0006631 IMP fatty acid metabolic process
GO:0007584 IEA response to nutrient
GO:0015909 IMP long-chain fatty acid transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031526 IDA brush border membrane
GO:0031957 IDA very long-chain fatty acid-CoA ligase activity
GO:0042760 IDA very long-chain fatty acid catabolic process
GO:0043588 IMP skin development
GO:0044539 IEA long-chain fatty acid import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300456 SLC27A4-001 protein_coding Homo_sapiens 0 2505
ENST00000372870 SLC27A4-002 protein_coding Homo_sapiens 0 745

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