C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007E7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167113-ENSG00000167114 CGP 9606 9:128322536-128361470
GeneTranscriptPositionBiotype
ENSG00000167112 (TRUB2)
TruB pseudouridine (psi) synthase family member 2 		ENST00000372890 (TRUB2-001) 128309103-128322742 protein_coding
ENST00000460320 (TRUB2-003) 128309693-128322413 processed_transcript
ENST00000461180 (TRUB2-002) 128309784-128311354 processed_transcript
ENSG00000167113 (COQ4)
coenzyme Q4 		ENST00000300452 (COQ4-001) 128322536-128334072 protein_coding
ENST00000372875 (COQ4-003) 128322852-128326400 protein_coding
ENST00000461102 (COQ4-002) 128330412-128334068 processed_transcript
ENST00000608951 (COQ4-005) 128322582-128323584 protein_coding
ENST00000609948 (COQ4-004) 128322544-128323586 protein_coding
ENSG00000167114 (SLC27A4)
solute carrier family 27 (fatty acid transporter), member 4 		ENST00000300456 (SLC27A4-001) 128340728-128361470 protein_coding
ENST00000372870 (SLC27A4-002) 128340646-128361217 protein_coding
ENSG00000223551 (TMSB4XP4)
thymosin beta 4, X-linked pseudogene 4 		ENST00000323496 (TMSB4XP4-001) 128342153-128342770 processed_pseudogene
CIL_0007E7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026798-ENSMUSG00000059316 CGP 10090 2:29787493-29817522
GeneTranscriptPositionBiotype
ENSMUSG00000026798 (Coq4)
coenzyme Q4 homolog (yeast) 		ENSMUST00000028137 (Coq4-001) 29788259-29797743 protein_coding
ENSMUST00000138233 (Coq4-002) 29795565-29796986 retained_intron
ENSMUST00000142694 (Coq4-004) 29789977-29790638 retained_intron
ENSMUST00000143616 (Coq4-003) 29787493-29797935 nonsense_mediated_decay
ENSMUST00000148791 (Coq4-005) 29788271-29796002 protein_coding
ENSMUST00000176348 (Coq4-006) 29788220-29796602 nonsense_mediated_decay
ENSMUSG00000039826 (Trub2)
TruB pseudouridine (psi) synthase homolog 2 (E. coli) 		ENSMUST00000048044 (Trub2-001) 29776110-29788502 protein_coding
ENSMUST00000113803 (Trub2-004) 29783219-29787630 retained_intron
ENSMUST00000113807 (Trub2-002) 29761224-29787648 protein_coding
ENSMUST00000148120 (Trub2-005) 29779211-29782196 retained_intron
ENSMUST00000156846 (Trub2-003) 29774684-29787660 nonsense_mediated_decay
ENSMUST00000175644 (Trub2-006) 29784920-29787633 retained_intron
ENSMUST00000176167 (Trub2-007) 29778753-29782342 retained_intron
ENSMUST00000176312 (Trub2-009) 29777688-29787634 nonsense_mediated_decay
ENSMUST00000177133 (Trub2-010) 29778594-29787671 nonsense_mediated_decay
ENSMUST00000177467 (Trub2-008) 29777757-29787622 protein_coding
ENSMUSG00000059316 (Slc27a4)
solute carrier family 27 (fatty acid transporter), member 4 		ENSMUST00000080065 (Slc27a4-001) 29802634-29817522 protein_coding
ENSMUST00000136444 (Slc27a4-002) 29806998-29810903 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007E7_0001ENSG00000167112ENST00000372890ENST00000460320ENST00000461180ENSG00000167113ENST00000300452ENST00000372875ENST00000461102ENST00000608951ENST00000609948ENSG00000167114ENST00000300456ENST00000372870ENSG00000223551ENST00000323496CIL_0007E7_0002ENSMUSG00000026798ENSMUST00000028137ENSMUST00000138233ENSMUST00000142694ENSMUST00000143616ENSMUST00000148791ENSMUST00000176348ENSMUSG00000039826ENSMUST00000048044ENSMUST00000113803ENSMUST00000113807ENSMUST00000148120ENSMUST00000156846ENSMUST00000175644ENSMUST00000176167ENSMUST00000176312ENSMUST00000177133ENSMUST00000177467ENSMUSG00000059316ENSMUST00000080065ENSMUST00000136444
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007E7_0001ENSG00000167112ENST00000372890ENST00000460320ENSG00000167113ENST00000300452ENST00000372875ENST00000461102ENST00000608951ENST00000609948ENSG00000167114ENST00000300456ENST00000372870ENSG00000223551ENST00000323496CIL_0007E7_0002ENSMUSG00000026798ENSMUST00000028137ENSMUST00000138233ENSMUST00000148791ENSMUST00000176348ENSMUSG00000039826ENSMUST00000048044ENSMUST00000148120ENSMUST00000156846ENSMUST00000176312ENSMUST00000177467ENSMUSG00000059316ENSMUST00000080065
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167112 ENST00000372890 6.927±0.00 13.879±0.00 N/A 13.171±7.87 5.289±4.50 4.361±3.04 7.709±4.05 9.296±7.84 9.943±8.81 2.396±1.64 5.669±0.00 13.996±8.85 13.489±4.94 11.335±7.86
ENST00000460320 N/A N/A N/A N/A 1.198±0.00 2.210±0.00 9.387±0.00 4.709±0.00 2.555±0.00 N/A 3.288±1.62 N/A N/A N/A
ENST00000461180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167113 ENST00000300452 11.646±0.00 18.383±0.00 N/A 14.095±0.00 16.282±0.00 4.725±3.17 9.198±0.00 27.856±0.00 13.505±11.48 17.038±0.00 7.127±3.75 19.676±0.98 21.666±4.43 14.210±0.00
ENST00000372875 N/A N/A 1.889±0.00 N/A N/A N/A N/A N/A N/A 2.666±0.00 N/A N/A N/A N/A
ENST00000461102 N/A 3.476±0.00 0.744±0.00 2.049±0.00 1.767±0.00 0.797±0.31 0.821±0.00 2.694±1.46 N/A 0.969±0.30 N/A 3.684±0.67 N/A 4.920±2.73
ENST00000608951 N/A N/A 2.478±0.00 N/A N/A N/A N/A N/A N/A N/A 2.584±0.00 N/A N/A N/A
ENST00000609948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.942±0.00 N/A N/A
ENSG00000167114 ENST00000300456 5.612±0.00 4.170±0.00 1.672±0.00 5.094±2.48 3.892±3.31 3.320±0.60 2.234±2.06 9.571±8.74 9.704±0.00 2.279±1.57 4.678±4.22 6.712±2.73 7.073±2.00 15.389±1.21
ENST00000372870 2.338±0.00 7.540±0.00 N/A 4.739±0.00 3.241±2.99 5.753±0.00 2.219±0.00 12.958±0.00 8.106±0.00 N/A N/A 4.545±1.17 2.492±0.60 9.372±1.46
ENSG00000223551 ENST00000323496 1.000±0.00 1.386±0.00 0.276±0.00 2.020±1.36 0.682±0.19 1.301±0.64 0.322±0.18 0.636±0.18 0.742±0.66 1.540±0.02 0.100±0.02 0.829±0.72 0.182±0.06 0.775±0.51
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026798 ENSMUST00000028137 7.773±1.35 9.391±1.67 4.782±0.58 7.474±0.84 6.234±1.36 4.768±0.58 5.779±0.84 12.243±1.14 4.581±1.08 5.633±0.08 N/A 7.640±2.90 4.404±1.24 20.257±8.33
ENSMUST00000138233 N/A 14.437±0.00 N/A N/A N/A 6.610±0.00 N/A N/A N/A 6.411±0.00 N/A N/A 2.838±0.00 16.552±6.17
ENSMUST00000142694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148791 N/A 73.393±11.06 N/A N/A 15.763±2.12 18.691±6.75 N/A 26.774±0.42 9.969±1.87 12.054±0.47 N/A 19.938±3.19 N/A N/A
ENSMUST00000176348 N/A 16.225±3.00 N/A N/A 12.776±2.20 13.259±2.32 10.668±0.59 21.116±3.18 5.529±0.44 7.461±1.21 N/A 14.893±2.62 6.356±0.00 36.311±0.97
ENSMUSG00000039826 ENSMUST00000048044 12.099±2.11 8.140±0.94 4.404±0.86 3.927±1.29 13.344±4.44 4.222±0.59 7.645±0.60 8.254±0.91 4.023±1.06 7.465±1.47 5.661±1.78 8.512±2.46 2.903±1.19 N/A
ENSMUST00000113803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.215±0.00 6.697±0.00 N/A
ENSMUST00000156846 4.933±1.81 N/A 1.617±0.16 4.615±1.41 N/A N/A 1.488±0.15 N/A 1.727±0.41 N/A 1.891±0.13 3.311±0.77 1.644±0.65 N/A
ENSMUST00000175644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176312 N/A N/A N/A 13.161±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177467 N/A N/A N/A 12.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 8.426±2.05 N/A
ENSMUSG00000059316 ENSMUST00000080065 17.380±1.82 23.502±1.20 7.102±0.76 14.142±5.43 15.376±4.72 34.507±2.43 5.689±0.78 16.706±5.40 5.829±5.54 7.076±1.89 2.368±0.35 19.398±6.95 6.012±3.63 1.428±0.93
ENSMUST00000136444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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