C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 27 (fatty acid transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300456 SLC27A4-001 ENSG00000167114 9606 + 9:128340728-128361470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300456 5.612±0.00 4.170±0.00 1.672±0.00 5.094±2.48 3.892±3.31 3.320±0.60 2.234±2.06 9.571±8.74 9.704±0.00 2.279±1.57 4.678±4.22 6.712±2.73 7.073±2.00 15.389±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E7 CIL_0007E7_0001 CGP 9:128322536-128361470
CIL_0007EA CIL_0007EA_0001 CGP 9:128340646-128392016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000038 IEA very long-chain fatty acid metabolic process
GO:0000166 IEA nucleotide binding
GO:0001579 IEA medium-chain fatty acid transport
GO:0001676 IDA long-chain fatty acid metabolic process
GO:0003824 IEA catalytic activity
GO:0004467 IDA long-chain fatty acid-CoA ligase activity
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 TAS plasma membrane
GO:0005902 IEA microvillus
GO:0006629 TAS lipid metabolic process
GO:0006631 IEA fatty acid metabolic process
GO:0006810 TAS transport
GO:0007584 IEA response to nutrient
GO:0008152 IEA metabolic process
GO:0015245 TAS fatty acid transporter activity
GO:0015908 TAS fatty acid transport
GO:0015909 TAS long-chain fatty acid transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031526 IEA brush border membrane
GO:0031957 IEA very long-chain fatty acid-CoA ligase activity
GO:0042760 IEA very long-chain fatty acid catabolic process
GO:0043588 IEA skin development
GO:0044539 IDA long-chain fatty acid import
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080065 Slc27a4-001 protein_coding Mus_musculus 0 2505
ENSDART00000004181 slc27a4-001 protein_coding Danio_rerio 0 573
ENSMUST00000136444 Slc27a4-002 processed_transcript Mus_musculus 0 414
ENSDART00000108769 slc27a1b-001 protein_coding Danio_rerio 2e-34 152

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