C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Formin-1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081349 FMN1-201 ENSMUSG00000100934 10090 + 2:113441289-113709460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000081349
Transcript ID Adrenal Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081349 0.251±0.19 0.043±0.00 0.324±0.00 0.048±0.00 0.151±0.02 0.294±0.00 0.026±0.01 1.424±0.75 0.537±0.03 0.875±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0002 VISTA 2:113391542-113992644
CIL_0000Z5 CIL_0000Z5_0003 CGP 2:113441289-113758646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IMP kidney development
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005884 IEA actin filament
GO:0005886 IEA plasma membrane
GO:0008017 IDA microtubule binding
GO:0010467 IMP gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0017124 IPI SH3 domain binding
GO:0030054 IEA cell junction
GO:0030838 IDA positive regulation of actin filament polymerization
GO:0035136 IMP forelimb morphogenesis
GO:0035137 IMP hindlimb morphogenesis
GO:0045010 IEA actin nucleation
GO:0048705 IMP skeletal system morphogenesis
GO:0048813 IGI dendrite morphogenesis
GO:0051127 IDA positive regulation of actin nucleation
GO:0051894 IMP positive regulation of focal adhesion assembly
GO:0060173 IMP limb development
GO:0072092 IMP ureteric bud invasion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334528 FMN1-001 protein_coding Homo_sapiens 0 3158
ENST00000558197 FMN1-002 protein_coding Homo_sapiens 0 990
ENST00000558628 FMN1-007 retained_intron Homo_sapiens 0 303
ENST00000558882 FMN1-010 processed_transcript Homo_sapiens 0 590
ENST00000559047 FMN1-005 protein_coding Homo_sapiens 0 2340
ENST00000559150 FMN1-006 processed_transcript Homo_sapiens 9.99967e-42 174
ENST00000560317 FMN1-008 protein_coding Homo_sapiens 0 621
ENST00000561249 FMN1-003 protein_coding Homo_sapiens 0 2172
ENST00000616417 FMN1-201 protein_coding Homo_sapiens 0 2340

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