C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00097N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs910 VISTA 9606 15:32499326-33100458
GeneTranscriptPositionBiotype
ENSG00000166922 (SCG5)
secretogranin V (7B2 protein) 		ENST00000300175 (SCG5-001) 32641676-32697098 protein_coding
ENST00000413748 (SCG5-002) 32641676-32697098 protein_coding
ENST00000470349 (SCG5-006) 32673055-32691763 processed_transcript
ENST00000471027 (SCG5-009) 32643623-32691909 protein_coding
ENST00000475752 (SCG5-008) 32684440-32697096 retained_intron
ENST00000494364 (SCG5-004) 32641699-32697088 protein_coding
ENST00000497208 (SCG5-003) 32641702-32696889 protein_coding
ENST00000498069 (SCG5-005) 32677560-32696626 processed_transcript
ENST00000498607 (SCG5-007) 32684416-32692308 retained_intron
ENSG00000166923 (GREM1)
gremlin 1, DAN family BMP antagonist 		ENST00000560677 (GREM1-005) 32718004-32731275 protein_coding
ENST00000560830 (GREM1-002) 32718004-32733302 protein_coding
ENST00000622074 (GREM1-001) 32717974-32745107 protein_coding
ENSG00000198826 (ARHGAP11A)
Rho GTPase activating protein 11A 		ENST00000361627 (ARHGAP11A-001) 32615490-32639949 protein_coding
ENST00000543522 (ARHGAP11A-005) 32615571-32637903 protein_coding
ENST00000562481 (ARHGAP11A-007) 32628728-32636342 protein_coding
ENST00000563330 (ARHGAP11A-006) 32615152-32616250 processed_transcript
ENST00000563864 (ARHGAP11A-004) 32615565-32636148 protein_coding
ENST00000564918 (ARHGAP11A-008) 32632825-32636296 retained_intron
ENST00000565905 (ARHGAP11A-002) 32615144-32638110 protein_coding
ENST00000567348 (ARHGAP11A-003) 32615539-32636181 protein_coding
ENSG00000232653 (GOLGA8N)
golgin A8 family, member N 		ENST00000448387 (GOLGA8N-201) 32593456-32607310 protein_coding
ENST00000453952 (GOLGA8N-006) 32593456-32594840 retained_intron
ENST00000567075 (GOLGA8N-002) 32593460-32596780 retained_intron
ENST00000569536 (GOLGA8N-003) 32596248-32597640 retained_intron
ENST00000569659 (GOLGA8N-001) 32593554-32603978 protein_coding
ENST00000605665 (GOLGA8N-004) 32602012-32603287 processed_transcript
ENST00000611209 (GOLGA8N-005) 32594188-32597925 protein_coding
ENSG00000248905 (FMN1)
formin 1 		ENST00000320930 (FMN1-004) 33149784-33194696 protein_coding
ENST00000334528 (FMN1-001) 32765546-33067884 protein_coding
ENST00000558197 (FMN1-002) 33062667-33068162 protein_coding
ENST00000558628 (FMN1-007) 32908159-32926261 retained_intron
ENST00000558711 (FMN1-009) 32899807-32902040 protein_coding
ENST00000558882 (FMN1-010) 32774323-32860837 processed_transcript
ENST00000559047 (FMN1-005) 32774310-33154914 protein_coding
ENST00000559150 (FMN1-006) 33064426-33068032 processed_transcript
ENST00000559610 (FMN1-011) 32810895-32888254 protein_coding
ENST00000560317 (FMN1-008) 32899795-32926260 protein_coding
ENST00000561249 (FMN1-003) 32774151-33155040 protein_coding
ENST00000616417 (FMN1-201) 32765545-33194733 protein_coding
ENSG00000254912 (RP11-632K20.2)
 ENST00000528049 (RP11-632K20.2-001) 32494003-32500346 unprocessed_pseudogene
ENSG00000259392 (RP11-758N13.3)
 ENST00000561418 (RP11-758N13.3-001) 32836983-32837326 transcribed_processed_pseudogene
ENSG00000259686 (HNRNPA1P71)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 71 		ENST00000559135 (HNRNPA1P71-001) 33012119-33013068 processed_pseudogene
ENSG00000261064 (RP11-1000B6.3)
 ENST00000561999 (RP11-1000B6.3-001) 32536714-32575643 lincRNA
ENST00000564670 (RP11-1000B6.3-003) 32536047-32587613 lincRNA
ENSG00000276724 (RP11-1000B6.7)
 ENST00000616244 (RP11-1000B6.7-001) 32583612-32584312 sense_intronic
CIL_00097N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs910 VISTA 10090 2:113391542-113992644
GeneTranscriptPositionBiotype
ENSMUSG00000023236 (Scg5)
secretogranin V 		ENSMUST00000024005 (Scg5-001) 113776362-113829121 protein_coding
ENSMUST00000139975 (Scg5-002) 113827340-113828762 processed_transcript
ENSMUSG00000041219 (Arhgap11a)
Rho GTPase activating protein 11A 		ENSMUST00000102545 (Arhgap11a-001) 113831546-113848656 protein_coding
ENSMUST00000110947 (Arhgap11a-003) 113833261-113848297 protein_coding
ENSMUST00000110948 (Arhgap11a-002) 113831492-113848661 protein_coding
ENSMUST00000110949 (Arhgap11a-201) 113831495-113848615 protein_coding
ENSMUSG00000044042 (Fmn1)
formin 1 		ENSMUST00000099576 (Fmn1-201) 113327736-113716767 protein_coding
ENSMUST00000102547 (Fmn1-001) 113327782-113709855 protein_coding
ENSMUST00000110954 (Fmn1-003) 113327771-113498056 processed_transcript
ENSMUST00000145891 (Fmn1-006) 113685105-113709734 processed_transcript
ENSMUST00000150510 (Fmn1-007) 113685090-113693151 processed_transcript
ENSMUST00000152255 (Fmn1-004) 113685105-113709852 processed_transcript
ENSMUST00000153151 (Fmn1-005) 113708671-113709730 processed_transcript
ENSMUST00000161731 (Fmn1-008) 113363840-113709606 protein_coding
ENSMUST00000185668 (Fmn1-002) 113441064-113709855 processed_transcript
ENSMUSG00000074934 (Grem1)
gremlin 1 		ENSMUST00000099575 (Grem1-001) 113746164-113758646 protein_coding
ENSMUSG00000084798 (4930533B01Rik)
RIKEN cDNA 4930533B01 gene 		ENSMUST00000123377 (4930533B01Rik-001) 113691053-113708550 antisense
ENSMUSG00000085508 (Gm13965)
predicted gene 13965 		ENSMUST00000154834 (Gm13965-001) 113400459-113410250 processed_transcript
ENSMUSG00000087106 (Gm13964)
predicted gene 13964 		ENSMUST00000133815 (Gm13964-001) 113500679-113504034 antisense
ENSMUSG00000096006 (Gm21596)
predicted gene, 21596 		ENSMUST00000178049 (Gm21596-201) 113919247-113920562 processed_pseudogene
ENSMUSG00000100934 (FMN1)
Formin-1 		ENSMUST00000081349 (FMN1-201) 113441289-113709460 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00097N_0001ENSG00000166922ENST00000300175ENST00000413748ENST00000470349ENST00000471027ENST00000475752ENST00000494364ENST00000497208ENST00000498069ENST00000498607ENSG00000166923ENST00000560677ENST00000560830ENST00000622074ENSG00000198826ENST00000361627ENST00000543522ENST00000562481ENST00000563330ENST00000563864ENST00000564918ENST00000565905ENST00000567348ENSG00000232653ENST00000448387ENST00000453952ENST00000567075ENST00000569536ENST00000569659ENST00000605665ENST00000611209ENSG00000248905ENST00000320930ENST00000334528ENST00000558197ENST00000558628ENST00000558711ENST00000558882ENST00000559047ENST00000559150ENST00000559610ENST00000560317ENST00000561249ENST00000616417ENSG00000254912ENST00000528049ENSG00000259392ENST00000561418ENSG00000259686ENST00000559135ENSG00000261064ENST00000561999ENST00000564670ENSG00000276724ENST00000616244CIL_00097N_0002ENSMUSG00000023236ENSMUST00000024005ENSMUST00000139975ENSMUSG00000041219ENSMUST00000102545ENSMUST00000110947ENSMUST00000110948ENSMUST00000110949ENSMUSG00000044042ENSMUST00000099576ENSMUST00000102547ENSMUST00000110954ENSMUST00000145891ENSMUST00000150510ENSMUST00000152255ENSMUST00000153151ENSMUST00000161731ENSMUST00000185668ENSMUSG00000074934ENSMUST00000099575ENSMUSG00000084798ENSMUST00000123377ENSMUSG00000085508ENSMUST00000154834ENSMUSG00000087106ENSMUST00000133815ENSMUSG00000096006ENSMUST00000178049ENSMUSG00000100934ENSMUST00000081349
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166922 ENST00000300175 N/A N/A N/A 24.985±12.69 N/A 2.061±0.00 N/A N/A N/A N/A N/A 1.852±0.83 N/A 3.158±1.63
ENST00000413748 N/A N/A N/A 61.558±31.91 0.154±0.00 0.568±0.14 N/A N/A N/A N/A N/A 3.602±4.04 0.499±0.00 4.510±0.00
ENST00000470349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.09 6.416±0.00
ENST00000471027 N/A N/A N/A N/A N/A 0.397±0.00 0.058±0.00 N/A N/A N/A 0.024±0.00 N/A 0.196±0.06 N/A
ENST00000475752 2.636±0.00 0.187±0.00 N/A 14.073±0.00 0.115±0.00 0.626±0.00 N/A 0.887±0.00 0.136±0.00 N/A N/A N/A 0.100±0.00 1.995±0.00
ENST00000494364 N/A N/A N/A N/A 0.164±0.00 0.468±0.20 N/A 0.516±0.00 0.339±0.00 0.395±0.00 N/A N/A N/A N/A
ENST00000497208 N/A 0.056±0.00 N/A N/A 0.520±0.00 N/A N/A N/A 0.340±0.00 N/A N/A N/A 0.187±0.00 N/A
ENST00000498069 N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A 0.629±0.00 0.350±0.00 N/A 0.905±0.00 N/A N/A
ENST00000498607 0.717±0.00 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166923 ENST00000560677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.483±1.16 N/A N/A N/A
ENST00000560830 13.262±0.00 14.416±0.00 0.959±0.00 4.028±2.37 17.026±16.48 30.153±25.95 0.105±0.08 1.021±0.86 0.958±0.32 0.753±0.36 1.099±0.00 8.335±6.17 0.206±0.04 0.881±0.48
ENST00000622074 1.531±0.00 3.238±0.00 0.028±0.00 0.676±0.56 1.558±1.38 5.048±4.71 0.020±0.02 0.209±0.19 0.119±0.04 0.099±0.07 0.020±0.00 0.852±0.53 0.037±0.02 0.159±0.12
ENSG00000198826 ENST00000361627 0.232±0.00 0.495±0.00 N/A 0.278±0.00 0.478±0.05 0.712±0.39 0.247±0.00 0.232±0.00 0.108±0.00 0.205±0.00 N/A 1.338±0.67 0.797±0.36 1.607±0.33
ENST00000543522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.422±0.00 N/A N/A
ENST00000562481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.399±0.00 N/A N/A N/A
ENST00000563330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.786±0.00 N/A 2.120±0.00 N/A
ENST00000563864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564918 N/A N/A N/A N/A N/A N/A N/A 1.408±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565905 N/A N/A N/A 0.243±0.00 0.851±0.00 0.602±0.00 N/A N/A N/A N/A N/A N/A N/A 1.418±0.00
ENST00000567348 N/A N/A N/A N/A N/A 0.975±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232653 ENST00000448387 0.846±0.00 1.358±0.00 0.616±0.00 0.968±0.51 1.234±0.21 0.480±0.12 0.993±0.00 1.316±0.00 0.630±0.00 1.524±0.39 0.086±0.00 1.558±0.00 0.354±0.07 3.271±0.05
ENST00000453952 N/A N/A N/A N/A N/A N/A 0.806±0.00 0.835±0.00 2.031±0.00 N/A N/A N/A N/A N/A
ENST00000567075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248905 ENST00000320930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.328±0.00 N/A N/A N/A
ENST00000334528 0.148±0.00 0.091±0.00 N/A N/A 0.196±0.00 2.620±0.00 0.105±0.00 0.341±0.00 N/A 0.443±0.00 0.102±0.05 0.606±0.38 0.562±0.43 N/A
ENST00000558197 N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 0.258±0.00 1.981±0.00 N/A 0.956±0.00 N/A N/A
ENST00000558628 N/A N/A N/A N/A N/A N/A N/A 1.447±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559047 N/A N/A N/A 3.748±0.00 0.811±0.00 N/A 0.195±0.00 N/A 0.238±0.00 1.500±0.00 N/A 0.695±0.00 0.314±0.00 3.543±0.00
ENST00000559150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561249 N/A N/A N/A 2.390±0.00 1.156±0.00 N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A
ENST00000616417 N/A N/A N/A 0.903±0.31 N/A N/A 0.067±0.00 0.140±0.00 N/A N/A 0.039±0.00 N/A 0.055±0.00 2.374±0.36
ENSG00000254912 ENST00000528049 0.492±0.00 1.264±0.00 0.134±0.00 0.215±0.00 0.628±0.00 0.269±0.00 0.130±0.00 0.207±0.08 0.037±0.00 0.159±0.00 0.099±0.00 0.342±0.40 0.119±0.11 0.494±0.01
ENSG00000259392 ENST00000561418 N/A 0.141±0.00 1.581±0.00 0.144±0.10 1.513±0.00 0.655±0.00 N/A N/A 0.857±0.00 N/A N/A 0.182±0.09 N/A 0.089±0.00
ENSG00000259686 ENST00000559135 N/A 0.014±0.00 N/A 0.059±0.00 0.014±0.00 N/A 0.026±0.00 0.036±0.00 0.262±0.00 0.014±0.00 0.013±0.00 N/A 0.041±0.00 N/A
ENSG00000261064 ENST00000561999 N/A N/A N/A N/A N/A N/A 3.443±0.00 N/A N/A N/A 1.447±0.00 N/A 2.043±0.00 2.944±0.00
ENST00000564670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276724 ENST00000616244 1.606±0.00 2.460±0.00 2.538±0.00 2.390±1.34 2.228±0.03 1.066±0.25 2.915±1.18 1.229±0.06 1.298±1.02 1.906±1.20 0.607±0.00 2.472±1.78 0.236±0.15 1.913±0.36
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023236 ENSMUST00000024005 0.254±0.22 9.420±2.78 0.489±0.02 45.184±6.15 0.206±0.16 2.881±0.73 0.037±0.01 4.321±0.31 0.066±0.04 0.377±0.05 0.073±0.05 2.102±0.77 0.789±0.79 0.562±0.09
ENSMUST00000139975 N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A 0.097±0.07 0.129±0.00 N/A N/A N/A N/A
ENSMUSG00000041219 ENSMUST00000102545 0.705±0.23 N/A 0.480±0.02 2.830±1.95 0.307±0.00 N/A N/A N/A 9.056±3.32 0.433±0.05 0.141±0.04 1.984±0.39 0.325±0.00 0.622±0.01
ENSMUST00000110947 0.200±0.11 0.363±0.00 N/A N/A 0.481±0.10 0.852±0.56 0.151±0.00 N/A N/A N/A 0.077±0.00 N/A N/A 0.512±0.05
ENSMUST00000110948 0.181±0.11 0.184±0.10 0.241±0.05 1.666±0.05 0.383±0.19 0.498±0.19 0.111±0.08 0.261±0.11 1.863±1.66 0.381±0.04 0.070±0.00 1.960±0.69 1.942±1.08 0.551±0.15
ENSMUST00000110949 N/A 0.235±0.08 0.351±0.03 0.775±0.53 0.444±0.15 1.060±0.42 0.080±0.03 0.253±0.11 2.754±0.90 N/A 0.195±0.05 1.552±0.86 3.584±3.84 N/A
ENSMUSG00000044042 ENSMUST00000099576 N/A 0.317±0.00 N/A 1.160±0.00 N/A N/A N/A N/A N/A N/A 0.016±0.01 N/A 0.058±0.00 1.888±0.65
ENSMUST00000102547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.100±0.09
ENSMUST00000110954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A
ENSMUST00000150510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 97.660±6.67
ENSMUST00000161731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.385±0.00 N/A N/A
ENSMUST00000185668 N/A 0.480±0.00 N/A 0.061±0.00 N/A N/A N/A N/A 0.085±0.00 0.298±0.00 N/A 1.096±0.12 0.198±0.06 N/A
ENSMUSG00000074934 ENSMUST00000099575 0.014±0.00 0.051±0.03 0.041±0.01 0.634±0.31 1.474±0.44 27.237±4.13 0.232±0.03 0.146±0.11 0.026±0.02 0.502±0.08 0.042±0.05 5.964±2.45 0.034±0.02 0.021±0.01
ENSMUSG00000084798 ENSMUST00000123377 N/A N/A 0.015±0.00 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 0.011±0.00 3.491±2.26
ENSMUSG00000085508 ENSMUST00000154834 0.282±0.13 0.144±0.01 0.159±0.03 4.367±5.80 0.869±0.42 0.290±0.15 0.160±0.03 0.348±0.26 0.050±0.02 0.124±0.03 0.156±0.04 2.523±3.35 0.931±0.74 0.723±0.89
ENSMUSG00000087106 ENSMUST00000133815 N/A N/A N/A 0.045±0.00 0.356±0.00 N/A N/A N/A 0.010±0.00 N/A N/A 0.301±0.26 0.009±0.00 0.857±0.53
ENSMUSG00000096006 ENSMUST00000178049 0.489±0.25 0.182±0.06 0.461±0.21 4.160±4.98 0.453±0.22 0.370±0.16 0.288±0.12 0.399±0.15 5.561±11.42 0.620±0.16 0.167±0.05 1.415±1.07 0.620±0.85 0.269±0.03
ENSMUSG00000100934 ENSMUST00000081349 N/A 0.251±0.19 N/A 0.043±0.00 0.324±0.00 N/A 0.048±0.00 N/A 0.151±0.02 0.294±0.00 0.026±0.01 1.424±0.75 0.537±0.03 0.875±0.00

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