C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shal-related family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081542 Kcnd2-001 ENSMUSG00000060882 10090 + 6:21215503-21729805 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081542
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081542 0.244±0.22 0.709±0.31 0.045±0.01 7.767±4.48 0.050±0.02 0.096±0.03 4.475±0.61 0.074±0.01 0.011±0.01 0.235±0.02 0.011±0.00 1.904±0.77 0.017±0.01 0.090±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QZ CIL_0003QZ_0002 CGP 6:18866318-21729805
CIL_0005U7 CIL_0005U7_0003 CGP 6:21215503-21852515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001508 IMP action potential
GO:0005250 IBA A-type (transient outward) potassium channel activity
GO:0005515 IPI protein binding
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IDA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043197 IDA dendritic spine
GO:0046872 IEA metal ion binding
GO:0051260 IEA protein homooligomerization
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000042673 kcnd2-201 protein_coding Danio_rerio 0 660
ENSDART00000138890 kcnd2-001 protein_coding Danio_rerio 0 660
ENST00000331113 KCND2-001 protein_coding Homo_sapiens 0 4198
ENST00000425288 KCND2-002 protein_coding Homo_sapiens 0 588
ENST00000473190 KCND2-003 retained_intron Homo_sapiens 0 453

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