C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulating synaptic membrane exocytosis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081544 Rims1-201 ENSMUSG00000041670 10090 - 1:22286251-22805724 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000081544
Transcript ID Brain Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000081544 1.723±0.00 0.011±0.00 0.011±0.00 0.009±0.00 0.006±0.00 0.088±0.05 0.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Q CIL_00053Q_0002 CGP 1:21398403-22805724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006886 IEA intracellular protein transport
GO:0017137 IEA Rab GTPase binding
GO:0042391 IDA regulation of membrane potential
GO:0044325 IDA ion channel binding
GO:0045202 IDA synapse
GO:0046872 IEA metal ion binding
GO:0048169 IMP regulation of long-term neuronal synaptic plasticity
GO:0048791 IGI calcium ion-dependent exocytosis of neurotransmitter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112553 rims1a-201 protein_coding Danio_rerio 0.000000004 69
ENST00000264839 RIMS1-003 protein_coding Homo_sapiens 0 1940
ENST00000370419 RIMS1-001 retained_intron Homo_sapiens 0 1142
ENST00000370420 RIMS1-004 protein_coding Homo_sapiens 0 1683
ENST00000401910 RIMS1-013 protein_coding Homo_sapiens 0 1886
ENST00000414192 RIMS1-009 protein_coding Homo_sapiens 0 1122
ENST00000425662 RIMS1-015 protein_coding Homo_sapiens 0 1053
ENST00000431478 RIMS1-021 processed_transcript Homo_sapiens 0 983
ENST00000453976 RIMS1-016 protein_coding Homo_sapiens 0 1672
ENST00000463023 RIMS1-020 retained_intron Homo_sapiens 0 1118
ENST00000491071 RIMS1-010 protein_coding Homo_sapiens 0 1142
ENST00000517433 RIMS1-012 protein_coding Homo_sapiens 0 2368
ENST00000517827 RIMS1-018 protein_coding Homo_sapiens 0 1024
ENST00000517960 RIMS1-005 protein_coding Homo_sapiens 0 1142
ENST00000518273 RIMS1-006 protein_coding Homo_sapiens 0 1142
ENST00000520567 RIMS1-007 protein_coding Homo_sapiens 0 1142
ENST00000521978 RIMS1-011 protein_coding Homo_sapiens 0 1674
ENST00000522211 RIMS1-019 protein_coding Homo_sapiens 0 1823
ENST00000522291 RIMS1-008 protein_coding Homo_sapiens 0 1142
ENST00000523963 RIMS1-014 protein_coding Homo_sapiens 0 1118
ENST00000524197 RIMS1-017 retained_intron Homo_sapiens 0 1024

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