C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 and PX domains 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081619 Sh3pxd2a-201 ENSMUSG00000053617 10090 - 19:47260174-47464411 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081619
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081619 8.179±0.00 1.216±0.00 6.313±0.00 3.647±1.99 5.662±0.77 2.012±1.07 1.552±1.10 10.231±5.41 7.872±0.73 2.592±0.26 3.631±2.38 0.410±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006T9 CIL_0006T9_0002 CGP 19:47178820-47464411
CIL_0006UD CIL_0006UD_0002 CGP 19:47260174-47537507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002102 ISS podosome
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0006801 IEA superoxide metabolic process
GO:0030054 IEA cell junction
GO:0035091 IEA phosphatidylinositol binding
GO:0042995 IEA cell projection
GO:0072593 IMP reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315994 SH3PXD2A-002 processed_transcript Homo_sapiens 0 2599
ENST00000355946 SH3PXD2A-201 protein_coding Homo_sapiens 0 2599
ENST00000369774 SH3PXD2A-001 protein_coding Homo_sapiens 0 3980
ENST00000420222 SH3PXD2A-003 protein_coding Homo_sapiens 0 2573

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