C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085245 Slc39a9-201 ENSMUSG00000048833 10090 + 12:80644215-80683341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085245 17.242±3.70 21.506±5.11 14.076±0.10 8.823±2.74 17.003±5.52 40.010±7.81 7.533±0.51 21.054±2.57 14.000±5.21 23.567±4.40 2.331±0.28 23.334±8.00 8.911±2.22 4.101±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UI CIL_0006UI_0002 CGP 12:80518990-80644341
CIL_0006UM CIL_0006UM_0002 CGP 12:80634022-80683341
CIL_0001K0 CIL_0001K0_0003 CGP 12:80644215-80724214

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006829 IEA zinc ion transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000031146 SLC39A9-013 protein_coding Homo_sapiens 0 1048
ENST00000336643 SLC39A9-009 protein_coding Homo_sapiens 0 1559
ENST00000538956 SLC39A9-008 retained_intron Homo_sapiens 0 996
ENST00000554023 SLC39A9-012 retained_intron Homo_sapiens 0 553
ENST00000554059 SLC39A9-001 retained_intron Homo_sapiens 0 302
ENST00000555245 SLC39A9-003 processed_transcript Homo_sapiens 0 1338
ENST00000555840 SLC39A9-005 nonsense_mediated_decay Homo_sapiens 0 1293
ENST00000556605 SLC39A9-004 protein_coding Homo_sapiens 0 894
ENST00000557046 SLC39A9-010 protein_coding Homo_sapiens 0 627

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