C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Williams Beuren syndrome chromosome region 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085984 Wbscr22-001 ENSMUSG00000005378 10090 - 5:135052957-135064666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085984 14.208±3.28 16.863±2.85 13.832±2.48 20.990±1.83 15.927±1.88 17.014±2.19 7.364±0.98 15.189±1.64 20.601±6.29 13.370±0.91 10.290±1.57 16.389±5.02 16.401±7.81 10.071±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000344 CIL_000344_0002 CGP 5:135023482-135064959

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0016568 IEA chromatin modification
GO:0032259 IEA methylation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265758 WBSCR22-001 protein_coding Homo_sapiens 0 758
ENST00000421744 WBSCR22-003 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000423497 WBSCR22-007 protein_coding Homo_sapiens 0 628
ENST00000428163 WBSCR22-013 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000430270 WBSCR22-006 nonsense_mediated_decay Homo_sapiens 0 682
ENST00000430446 WBSCR22-016 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000432522 WBSCR22-002 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000436944 WBSCR22-004 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000441822 WBSCR22-012 protein_coding Homo_sapiens 0 379
ENST00000442099 WBSCR22-017 protein_coding Homo_sapiens 0 303
ENST00000453316 WBSCR22-018 protein_coding Homo_sapiens 6e-37 158
ENST00000463307 WBSCR22-005 retained_intron Homo_sapiens 0 455
ENST00000471215 WBSCR22-008 retained_intron Homo_sapiens 5e-36 158
ENST00000478670 WBSCR22-010 retained_intron Homo_sapiens 0 219
ENST00000487006 WBSCR22-014 retained_intron Homo_sapiens 0 302
ENST00000496153 WBSCR22-011 retained_intron Homo_sapiens 0 326

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