C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Berardinelli-Seip congenital lipodystrophy 2 homolog (seipin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086058 Bscl2-008 ENSMUSG00000071657 10090 + 19:8840519-8848666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086058
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086058 228.403±79.92 196.067±18.44 30.843±1.28 26.802±0.00 210.830±36.24 67.966±8.07 16.939±5.34 73.139±16.58 38.358±20.43 55.115±6.43 1.870±0.00 74.335±20.90 6.346±3.35 170.841±72.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016042 IEA lipid catabolic process
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0045444 IMP fat cell differentiation
GO:0050995 IMP negative regulation of lipid catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278893 BSCL2-008 protein_coding Homo_sapiens 0 941
ENST00000301781 BSCL2-002 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000360796 BSCL2-003 protein_coding Homo_sapiens 0 1288
ENST00000403550 BSCL2-006 protein_coding Homo_sapiens 0 1288
ENST00000403734 HNRNPUL2-BSCL2-001 nonsense_mediated_decay Homo_sapiens 0 1288
ENST00000405837 BSCL2-001 protein_coding Homo_sapiens 0 1271
ENST00000407022 BSCL2-005 protein_coding Homo_sapiens 0 1288
ENST00000412351 BSCL2-015 processed_transcript Homo_sapiens 0 484
ENST00000421906 BSCL2-004 protein_coding Homo_sapiens 0 1295
ENST00000448568 BSCL2-022 protein_coding Homo_sapiens 0 937
ENST00000449636 BSCL2-012 protein_coding Homo_sapiens 2e-33 147
ENST00000463679 BSCL2-011 retained_intron Homo_sapiens 0 200
ENST00000468505 BSCL2-013 retained_intron Homo_sapiens 0 475
ENST00000470529 BSCL2-014 retained_intron Homo_sapiens 0 200
ENST00000524862 BSCL2-020 protein_coding Homo_sapiens 0 723
ENST00000526426 BSCL2-028 processed_transcript Homo_sapiens 0 361
ENST00000531524 BSCL2-023 protein_coding Homo_sapiens 0 283
ENST00000532115 BSCL2-017 processed_transcript Homo_sapiens 1.00053e-42 176
ENST00000532818 BSCL2-019 protein_coding Homo_sapiens 0 333
ENST00000533982 BSCL2-024 protein_coding Homo_sapiens 0 464
ENST00000537604 BSCL2-029 processed_transcript Homo_sapiens 0 292

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