C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Berardinelli-Seip congenital lipodystrophy 2 (seipin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360796 BSCL2-003 ENSG00000168000 9606 - 11:62690276-62707398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000360796
Transcript ID Brain
ENST00000360796 64.379±7.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076
CIL_000689 CIL_000689_0002 CGP 11:62690275-62709845

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008219 IEA cell death
GO:0016042 IEA lipid catabolic process
GO:0019915 IMP lipid storage
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0034389 IMP lipid particle organization
GO:0045444 ISS fat cell differentiation
GO:0050995 ISS negative regulation of lipid catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160556 Bscl2-002 protein_coding Mus_musculus 0 1399
ENSMUST00000171649 Bscl2-201 protein_coding Mus_musculus 0 1356
ENSMUST00000159634 Bscl2-001 protein_coding Mus_musculus 0 1356
ENSMUST00000162071 Bscl2-006 retained_intron Mus_musculus 0 1290
ENSMUST00000086058 Bscl2-008 protein_coding Mus_musculus 0 1288
ENSMUST00000162580 Bscl2-005 retained_intron Mus_musculus 0 909
ENSMUST00000160897 Bscl2-004 nonsense_mediated_decay Mus_musculus 0 782
ENSMUST00000159571 Bscl2-003 retained_intron Mus_musculus 0 782
ENSMUST00000159653 Bscl2-009 nonsense_mediated_decay Mus_musculus 0 459

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