C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HNRNPUL2-BSCL2 readthrough (NMD candidate)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403734 HNRNPUL2-BSCL2-001 ENSG00000234857 9606 - 11:62690275-62727384 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000403734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000403734 27.393±0.00 30.651±0.00 3.554±0.00 57.034±0.00 15.902±11.65 35.340±0.00 9.040±8.31 19.424±17.70 6.784±5.29 13.854±12.02 24.257±0.00 21.854±12.40 27.928±2.70 53.211±5.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076
CIL_000689 CIL_000689_0002 CGP 11:62690275-62709845

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0016301 IEA kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096753 Hnrnpul2-201 protein_coding Mus_musculus 0 3264
ENSMUST00000171649 Bscl2-201 protein_coding Mus_musculus 0 1356
ENSMUST00000160556 Bscl2-002 protein_coding Mus_musculus 0 1356
ENSMUST00000159634 Bscl2-001 protein_coding Mus_musculus 0 1356
ENSMUST00000162071 Bscl2-006 retained_intron Mus_musculus 0 1290
ENSMUST00000086058 Bscl2-008 protein_coding Mus_musculus 0 1288
ENSMUST00000162580 Bscl2-005 retained_intron Mus_musculus 0 909
ENSMUST00000160897 Bscl2-004 nonsense_mediated_decay Mus_musculus 0 739
ENSMUST00000159571 Bscl2-003 retained_intron Mus_musculus 0 739
ENSMUST00000159653 Bscl2-009 nonsense_mediated_decay Mus_musculus 0 459

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