C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | Berardinelli-Seip congenital lipodystrophy 2 (seipin) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000278893  |
BSCL2-008 |
ENSG00000168000 |
9606 | - |
11:62690276-62706315  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00089X | CIL_00089X_0001 | VISTA | 11:62298635-62900076 |
| CIL_000689 | CIL_000689_0002 | CGP | 11:62690275-62709845 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003674 | ND | molecular_function |
| GO:0008219 | IEA | cell death |
| GO:0016042 | IEA | lipid catabolic process |
| GO:0019915 | IMP | lipid storage |
| GO:0030176 | IDA | integral component of endoplasmic reticulum membrane |
| GO:0034389 | IMP | lipid particle organization |
| GO:0045444 | ISS | fat cell differentiation |
| GO:0050995 | ISS | negative regulation of lipid catabolic process |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000171649
|
Bscl2-201 | protein_coding | Mus_musculus | 0 | 942 |
|
ENSMUST00000162071
|
Bscl2-006 | retained_intron | Mus_musculus | 0 | 942 |
|
ENSMUST00000160556
|
Bscl2-002 | protein_coding | Mus_musculus | 0 | 942 |
|
ENSMUST00000159634
|
Bscl2-001 | protein_coding | Mus_musculus | 0 | 942 |
|
ENSMUST00000086058
|
Bscl2-008 | protein_coding | Mus_musculus | 0 | 941 |
|
ENSMUST00000160897
|
Bscl2-004 | nonsense_mediated_decay | Mus_musculus | 0 | 673 |
|
ENSMUST00000159571
|
Bscl2-003 | retained_intron | Mus_musculus | 0 | 673 |
|
ENSMUST00000162580
|
Bscl2-005 | retained_intron | Mus_musculus | 0 | 562 |
|
ENSMUST00000159653
|
Bscl2-009 | nonsense_mediated_decay | Mus_musculus | 0 | 198 |
