C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-catalytic region of tyrosine kinase adaptor protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086421 Nck2-001 ENSMUSG00000066877 10090 + 1:43445751-43570515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086421 17.696±4.42 17.326±3.26 14.681±0.86 14.955±9.95 19.884±11.18 32.050±2.94 5.390±0.93 10.506±1.09 4.737±3.44 22.870±2.37 6.455±0.86 22.799±7.53 10.159±3.71 8.392±5.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010G CIL_00010G_0002 CGP 1:43123074-43570515
CIL_0003Y7 CIL_0003Y7_0002 CGP 1:43444579-43742578

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006417 IEA regulation of translation
GO:0007015 IMP actin filament organization
GO:0012506 IDA vesicle membrane
GO:0016477 IMP cell migration
GO:0030032 IMP lamellipodium assembly
GO:0030838 IEA positive regulation of actin filament polymerization
GO:0042102 IEA positive regulation of T cell proliferation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233154 NCK2-001 protein_coding Homo_sapiens 0 1480
ENST00000393348 NCK2-004 protein_coding Homo_sapiens 0 628
ENST00000393349 NCK2-002 protein_coding Homo_sapiens 0 1424
ENST00000425756 NCK2-003 protein_coding Homo_sapiens 0 460
ENST00000451463 NCK2-201 protein_coding Homo_sapiens 0 560
ENST00000522586 NCK2-005 protein_coding Homo_sapiens 0 374

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