C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of defective silencing 3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086471 Suds3-201 ENSMUSG00000066900 10090 - 5:117091682-117115993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086471 19.967±3.19 15.170±5.25 24.334±2.89 21.366±4.81 12.573±4.17 35.380±6.80 16.669±1.04 29.299±1.07 19.329±4.93 14.465±2.16 22.247±2.15 30.809±8.97 17.116±2.95 23.273±7.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004407 ISS histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016575 ISS histone deacetylation
GO:0016580 IDA Sin3 complex
GO:0042802 IPI identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0042826 IDA histone deacetylase binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111646 suds3-001 protein_coding Danio_rerio 0 588
ENSDART00000114446 suds3-201 protein_coding Danio_rerio 0 494
ENST00000505831 SUDS3P1-001 processed_pseudogene Homo_sapiens 0 1003
ENST00000541280 SUDS3-003 processed_transcript Homo_sapiens 0 320
ENST00000541591 SUDS3-002 processed_transcript Homo_sapiens 0 496
ENST00000543473 SUDS3-001 protein_coding Homo_sapiens 0 1293
ENST00000617540 AC114936.1-201 processed_pseudogene Homo_sapiens 0 593

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