C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of defective silencing 3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543473 SUDS3-001 ENSG00000111707 9606 + 12:118376380-118418031 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000543473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000543473 6.367±0.00 6.435±0.00 1.923±0.00 5.304±0.32 6.985±0.50 7.304±1.47 3.746±1.23 5.651±3.13 5.941±3.21 5.149±0.48 1.709±1.00 9.396±4.51 4.804±1.82 22.070±11.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G7 CIL_0007G7_0002 CGP 12:118149801-118418031

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0004407 IDA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016575 IDA histone deacetylation
GO:0016580 ISS Sin3 complex
GO:0019899 IPI enzyme binding
GO:0021762 IEP substantia nigra development
GO:0042802 IEA identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0042826 ISS histone deacetylase binding
GO:0043065 IMP positive regulation of apoptotic process
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086471 Suds3-201 protein_coding Mus_musculus 0 1293
ENSMUST00000166397 Suds3-202 protein_coding Mus_musculus 0 1146
ENSDART00000111646 suds3-001 protein_coding Danio_rerio 0 551
ENSDART00000114446 suds3-201 protein_coding Danio_rerio 0 420

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