C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087316 Capn6-001 ENSMUSG00000067276 10090 - X:143802231-143827414 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087316 1.832±1.56 0.104±0.06 2.427±0.08 2.045±1.30 0.511±0.29 0.428±0.13 0.438±0.06 0.680±0.10 5.036±5.02 1.039±0.18 0.752±0.20 1.202±0.29 2.983±1.56 2.266±0.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079U CIL_00079U_0002 CGP X:143518591-143827414
CIL_00068U CIL_00068U_0002 CGP X:143802231-143933311

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001578 IMP microtubule bundle formation
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0005874 IDA microtubule
GO:0005876 IEA spindle microtubule
GO:0006508 IBA proteolysis
GO:0008017 IDA microtubule binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051493 IMP regulation of cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324068 CAPN6-001 protein_coding Homo_sapiens 0 2931

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