C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324068 CAPN6-001 ENSG00000077274 9606 - X:111245103-111270523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324068
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324068 0.100±0.00 0.759±0.00 0.359±0.00 2.897±1.15 1.020±0.29 0.023±0.00 1.826±1.81 0.235±0.11 0.268±0.07 0.221±0.07 1.157±1.02 76.694±19.12 5.966±5.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079U CIL_00079U_0001 CGP X:110944285-111270523
CIL_00068U CIL_00068U_0001 CGP X:111245103-111412375

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001578 ISS microtubule bundle formation
GO:0004198 IBA:IEA calcium-dependent cysteine-type endopeptidase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005874 IEA microtubule
GO:0005876 IDA spindle microtubule
GO:0006508 IBA:IEA proteolysis
GO:0008017 ISS microtubule binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051493 ISS regulation of cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087316 Capn6-001 protein_coding Mus_musculus 0 2931
ENSMUST00000151154 Capn6-002 retained_intron Mus_musculus 0 283

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