C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IX, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088349 Col9a1-002 ENSMUSG00000026147 10090 + 1:24195187-24252684 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000088349
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088349 0.010±0.00 0.284±0.10 0.090±0.03 0.082±0.02 0.043±0.00 0.056±0.06 0.025±0.01 0.436±0.00 0.014±0.00 1.480±1.79 0.143±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001894 IMP tissue homeostasis
GO:0003417 IGI growth plate cartilage development
GO:0051216 IMP cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320755 COL9A1-002 protein_coding Homo_sapiens 0 2350
ENST00000357250 COL9A1-001 protein_coding Homo_sapiens 0 2303
ENST00000360859 COL9A1-010 processed_transcript Homo_sapiens 0 647
ENST00000447041 COL9A1-007 processed_transcript Homo_sapiens 0 621
ENST00000470652 COL9A1-003 retained_intron Homo_sapiens 7e-27 124
ENST00000486080 COL9A1-008 processed_transcript Homo_sapiens 0 891
ENST00000489611 COL9A1-009 processed_transcript Homo_sapiens 0 891
ENST00000493682 COL9A1-005 retained_intron Homo_sapiens 0 787

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