C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088621 Srrm2-001 ENSMUSG00000039218 10090 + 17:23803221-23824741 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088621
Transcript ID Adipose Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088621 12.172±0.00 44.651±15.61 10.789±0.68 8.885±0.00 12.181±0.00 20.583±0.00 8.182±1.53 95.745±10.87 14.484±7.60 12.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0002 CGP 17:23790662-23829109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0015030 IEA Cajal body
GO:0016607 IEA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0047485 IEA protein N-terminus binding
GO:0070742 IEA C2H2 zinc finger domain binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301740 SRRM2-001 protein_coding Homo_sapiens 0 5033
ENST00000570539 SRRM2-032 protein_coding Homo_sapiens 4e-28 128
ENST00000570655 SRRM2-015 retained_intron Homo_sapiens 0 217
ENST00000570705 SRRM2-025 retained_intron Homo_sapiens 0 357
ENST00000570971 SRRM2-013 protein_coding Homo_sapiens 0 937
ENST00000571041 SRRM2-024 retained_intron Homo_sapiens 0 357
ENST00000571372 SRRM2-030 retained_intron Homo_sapiens 5e-23 111
ENST00000571378 SRRM2-007 protein_coding Homo_sapiens 0 2377
ENST00000572278 SRRM2-017 processed_transcript Homo_sapiens 0 444
ENST00000572721 SRRM2-021 processed_transcript Homo_sapiens 0 414
ENST00000572883 SRRM2-020 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000572952 SRRM2-018 retained_intron Homo_sapiens 0 874
ENST00000573311 SRRM2-023 retained_intron Homo_sapiens 0 538
ENST00000573451 SRRM2-014 retained_intron Homo_sapiens 0 300
ENST00000573498 SRRM2-016 retained_intron Homo_sapiens 0 603
ENST00000573583 SRRM2-033 processed_transcript Homo_sapiens 7e-27 124
ENST00000573692 SRRM2-031 nonsense_mediated_decay Homo_sapiens 0.0000000003 69
ENST00000574331 SRRM2-010 retained_intron Homo_sapiens 2e-27 128
ENST00000574340 SRRM2-012 protein_coding Homo_sapiens 4e-39 165
ENST00000574593 SRRM2-022 processed_transcript Homo_sapiens 0 1112
ENST00000575009 SRRM2-006 protein_coding Homo_sapiens 0 1190
ENST00000575701 SRRM2-011 retained_intron Homo_sapiens 5e-40 169
ENST00000575870 SRRM2-029 processed_transcript Homo_sapiens 0 562
ENST00000576415 SRRM2-028 protein_coding Homo_sapiens 0 490
ENST00000576674 SRRM2-019 processed_transcript Homo_sapiens 0 540
ENST00000576878 SRRM2-026 retained_intron Homo_sapiens 0 353
ENST00000576894 SRRM2-004 retained_intron Homo_sapiens 0 619
ENST00000576924 SRRM2-003 protein_coding Homo_sapiens 0 2318

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