C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HIV TAT specific factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088652 Htatsf1-001 ENSMUSG00000067873 10090 + X:57053615-57067183 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088652
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088652 3.279±0.56 10.336±1.11 25.462±17.60 3.326±2.18 1.548±0.27 6.502±0.91 3.639±0.95 5.656±3.69 3.623±1.17 35.790±4.92 17.508±22.22 95.354±73.91 12.178±15.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K2 CIL_0000K2_0002 CGP X:57043074-57067183
CIL_0000K3 CIL_0000K3_0002 CGP X:57053583-57106540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218364 HTATSF1-001 protein_coding Homo_sapiens 0 1426
ENST00000422268 HTATSF1P-001 processed_pseudogene Homo_sapiens 8e-19 99
ENST00000422677 HTATSF1P-001 processed_pseudogene Homo_sapiens 8e-19 99
ENST00000425695 HTATSF1-003 protein_coding Homo_sapiens 0 662
ENST00000432008 HTATSF1P-001 processed_pseudogene Homo_sapiens 8e-19 99
ENST00000436166 HTATSF1P-001 processed_pseudogene Homo_sapiens 8e-19 99
ENST00000437306 HTATSF1P-001 processed_pseudogene Homo_sapiens 8e-19 99
ENST00000439003 HTATSF1P-001 processed_pseudogene Homo_sapiens 8e-19 99
ENST00000448450 HTATSF1-002 protein_coding Homo_sapiens 0 797
ENST00000455641 HTATSF1P-001 processed_pseudogene Homo_sapiens 8e-19 99
ENST00000535601 HTATSF1-201 protein_coding Homo_sapiens 0 1463

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