C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease T2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089119 Rnaset2b-201 ENSMUSG00000094724 10090 + 17:6978860-6998193 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000089119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000089119 17.021±9.88 91.674±15.67 42.216±24.24 9.184±4.61 19.410±13.86 39.514±20.46 11.749±3.42 45.289±27.44 20.603±13.10 22.738±0.45 29.225±25.97 5.318±5.37 6.341±1.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094V CIL_00094V_0002 VISTA 17:6968493-7569968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004540 ISS ribonuclease activity
GO:0005615 ISS extracellular space
GO:0005764 ISS lysosome
GO:0005788 ISS endoplasmic reticulum lumen
GO:0006401 ISS RNA catabolic process
GO:0033897 IEA ribonuclease T2 activity
GO:0090501 ISS RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000028008 RNASET2-012 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000366855 RNASET2-007 protein_coding Homo_sapiens 0 473
ENST00000421787 RNASET2-002 nonsense_mediated_decay Homo_sapiens 4e-24 117
ENST00000476238 RNASET2-006 protein_coding Homo_sapiens 0 460
ENST00000478180 RNASET2-004 protein_coding Homo_sapiens 0 429
ENST00000496851 RNASET2-005 processed_transcript Homo_sapiens 0 276
ENST00000499370 RNASET2-010 retained_intron Homo_sapiens 0 294
ENST00000507747 RP11-514O12.4-001 protein_coding Homo_sapiens 0 292
ENST00000508775 RNASET2-001 protein_coding Homo_sapiens 0 473
ENST00000611959 RNASET2-201 protein_coding Homo_sapiens 3e-24 117
ENST00000620173 RNASET2-202 protein_coding Homo_sapiens 9e-25 119

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