C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NSFL1 (p97) cofactor (p47)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089140 Nsfl1c-001 ENSMUSG00000027455 10090 + 2:151494182-151511310 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089140 14.561±1.33 8.841±2.95 20.992±1.03 36.108±0.81 5.717±2.19 5.292±0.95 14.845±3.85 9.295±1.48 7.165±1.66 12.610±1.52 35.337±2.00 10.549±4.17 14.090±4.70 2.986±0.42

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0008289 IEA lipid binding
GO:0045111 IEA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216879 NSFL1C-002 protein_coding Homo_sapiens 0 1768
ENST00000353088 NSFL1C-004 protein_coding Homo_sapiens 0 970
ENST00000381653 NSFL1C-003 nonsense_mediated_decay Homo_sapiens 0 1068
ENST00000461211 NSFL1C-006 processed_transcript Homo_sapiens 0 1391
ENST00000470376 NSFL1C-001 nonsense_mediated_decay Homo_sapiens 0 743
ENST00000476071 NSFL1C-010 protein_coding Homo_sapiens 0 1807
ENST00000478168 NSFL1C-008 retained_intron Homo_sapiens 0 244
ENST00000487086 NSFL1C-009 retained_intron Homo_sapiens 0 387
ENST00000489203 NSFL1C-007 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000519856 RP11-697N18.3-001 processed_pseudogene Homo_sapiens 0 1155
ENST00000553571 NSFL1C-013 processed_transcript Homo_sapiens 0 276
ENST00000555359 NSFL1C-011 retained_intron Homo_sapiens 5e-28 128
ENST00000555568 NSFL1C-012 nonsense_mediated_decay Homo_sapiens 0 1040
ENST00000555944 NSFL1C-005 nonsense_mediated_decay Homo_sapiens 0 1225

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