C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ER degradation enhancer, mannosidase alpha-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089162 Edem1-201 ENSMUSG00000030104 10090 + 6:108828641-108859356 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089162
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089162 15.090±1.27 28.891±8.04 7.912±0.59 2.960±1.16 16.392±9.30 35.548±12.99 2.133±0.24 8.082±1.28 22.550±13.40 12.544±3.76 0.827±0.21 15.654±7.03 14.800±6.06 3.274±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RI CIL_0005RI_0002 CGP 6:108783059-108859356
CIL_0005RO CIL_0005RO_0002 CGP 6:108828641-111567230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0006986 IEA response to unfolded protein
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0051787 ISS misfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256497 EDEM1-001 protein_coding Homo_sapiens 0 2375
ENST00000434243 EDEM1-004 nonsense_mediated_decay Homo_sapiens 0 992
ENST00000443790 EDEM1-007 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000445686 EDEM1-003 protein_coding Homo_sapiens 0 1587
ENST00000465187 EDEM1-005 retained_intron Homo_sapiens 0 475
ENST00000465369 EDEM1-002 retained_intron Homo_sapiens 0 2043
ENST00000492751 EDEM1-006 retained_intron Homo_sapiens 0 278

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