C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-like modifier activating enzyme 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089287 Uba3-201 ENSMUSG00000030061 10090 - 6:97183816-97205642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089287 3.548±0.63 1.611±0.80 14.315±3.33 14.559±1.92 5.608±4.84 1.614±0.61 6.697±2.53 3.138±1.59 6.538±3.61 3.021±0.91 9.014±2.54 7.056±7.67 22.127±5.77 3.539±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TD CIL_0001TD_0003 CGP 6:97155266-97205642
CIL_00034O CIL_00034O_0002 CGP 6:97183670-97233315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 IMP mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IBA nucleus
GO:0005829 IBA cytosol
GO:0007113 IMP endomitotic cell cycle
GO:0016881 IEA acid-amino acid ligase activity
GO:0019781 IBA NEDD8 activating enzyme activity
GO:0045116 IBA protein neddylation
GO:0046982 IEA protein heterodimerization activity
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080752 uba3-001 protein_coding Danio_rerio 0 752
ENSDART00000156400 uba3-003 retained_intron Danio_rerio 0 265
ENST00000349511 UBA3-002 protein_coding Homo_sapiens 0 1901
ENST00000361055 UBA3-001 protein_coding Homo_sapiens 0 2056
ENST00000415609 UBA3-006 protein_coding Homo_sapiens 0 1561
ENST00000461522 UBA3-009 retained_intron Homo_sapiens 0 645
ENST00000461934 UBA3-007 nonsense_mediated_decay Homo_sapiens 0 1260
ENST00000464605 UBA3-011 retained_intron Homo_sapiens 9e-25 117
ENST00000465108 UBA3-003 retained_intron Homo_sapiens 0 604
ENST00000465627 UBA3-010 nonsense_mediated_decay Homo_sapiens 0 1260
ENST00000466763 UBA3-004 retained_intron Homo_sapiens 0 473
ENST00000485424 UBA3-008 retained_intron Homo_sapiens 0 335
ENST00000493957 UBA3-005 retained_intron Homo_sapiens 0 342

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