C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab geranylgeranyl transferase, b subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089950 Rabggtb-201 ENSMUSG00000038975 10090 - 3:153907289-153912966 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089950 7.996±2.55 11.788±2.38 16.068±1.09 20.947±3.12 8.386±1.47 8.412±1.13 16.863±6.49 22.012±4.04 29.788±18.90 6.309±2.00 15.636±4.56 16.378±10.06 29.949±10.67 2.995±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZQ CIL_0002ZQ_0002 CGP 3:153907289-153944632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0018344 IEA protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319942 RABGGTB-001 protein_coding Homo_sapiens 0 1112
ENST00000370826 RABGGTB-012 protein_coding Homo_sapiens 0 409
ENST00000461653 RABGGTB-006 processed_transcript Homo_sapiens 0 296
ENST00000462042 RABGGTB-011 processed_transcript Homo_sapiens 0 344
ENST00000462549 RP11-553D4.2-001 processed_pseudogene Homo_sapiens 0 279
ENST00000467748 RABGGTB-009 processed_transcript Homo_sapiens 0 222
ENST00000470201 RABGGTB-013 processed_transcript Homo_sapiens 0 726
ENST00000471759 RABGGTB-002 processed_transcript Homo_sapiens 0 710
ENST00000473406 RABGGTB-004 processed_transcript Homo_sapiens 0 617
ENST00000485459 RABGGTB-007 processed_transcript Homo_sapiens 0 300
ENST00000489450 RABGGTB-008 processed_transcript Homo_sapiens 0 279
ENST00000491266 RABGGTB-014 processed_transcript Homo_sapiens 0 741
ENST00000496055 RABGGTB-003 processed_transcript Homo_sapiens 0 710
ENST00000497648 RABGGTB-005 processed_transcript Homo_sapiens 2e-26 124

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