C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5499
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090731 Gm5499-001 ENSMUSG00000071035 10090 + 17:87078271-87079155 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090731 1.407±0.56 0.347±0.20 0.827±0.03 1.634±0.22 0.571±0.19 0.370±0.11 1.045±0.38 0.883±0.21 0.824±0.38 0.472±0.27 0.120±0.07 0.500±0.36 0.538±0.31 0.842±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KQ CIL_0006KQ_0002 CGP 17:87025550-87137583
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278422 TMX2-002 protein_coding Homo_sapiens 0 1000
ENST00000378312 TMX2-001 protein_coding Homo_sapiens 0 588
ENST00000436507 TMX2P1-001 processed_pseudogene Homo_sapiens 0 785
ENST00000524972 TMX2-005 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000525035 TMX2-008 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000528042 TMX2-004 retained_intron Homo_sapiens 0 274
ENST00000528110 TMX2-009 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000528395 TMX2-CTNND1-001 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000529403 TMX2-003 nonsense_mediated_decay Homo_sapiens 0 721
ENST00000530114 TMX2-007 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000533602 TMX2-006 nonsense_mediated_decay Homo_sapiens 0 279

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