C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092155 Col11a1-001 ENSMUSG00000027966 10090 + 3:114030540-114220718 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092155 0.377±0.07 0.102±0.07 2.195±0.13 2.106±0.61 0.148±0.04 0.105±0.06 0.035±0.03 0.043±0.02 0.712±0.36 0.070±0.04 0.235±0.08 3.305±2.24 2.787±3.24 0.090±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001502 IMP cartilage condensation
GO:0001503 IEA ossification
GO:0002063 IMP chondrocyte development
GO:0003007 IGI heart morphogenesis
GO:0003674 ND molecular_function
GO:0005201 IEA extracellular matrix structural constituent
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IDA collagen trimer
GO:0006029 IMP proteoglycan metabolic process
GO:0007601 IEA visual perception
GO:0007605 IEA sensory perception of sound
GO:0030199 IGI collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0035987 IEA endodermal cell differentiation
GO:0035989 IGI tendon development
GO:0042472 IMP inner ear morphogenesis
GO:0046872 IEA metal ion binding
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048705 IMP skeletal system morphogenesis
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0051216 IMP cartilage development
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353414 COL11A1-201 protein_coding Homo_sapiens 0 6462
ENST00000358392 COL11A1-202 protein_coding Homo_sapiens 0 6462
ENST00000370096 COL11A1-001 protein_coding Homo_sapiens 0 7520
ENST00000427239 COL11A1-002 protein_coding Homo_sapiens 0 900
ENST00000447608 COL11A1-003 protein_coding Homo_sapiens 0 562
ENST00000512756 COL11A1-008 protein_coding Homo_sapiens 0 5225

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