C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092512 P4ha1-003 ENSMUSG00000019916 10090 + 10:59323364-59371956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092512
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092512 5.222±1.97 7.328±2.06 6.049±0.28 4.238±2.39 3.891±0.90 3.013±0.70 5.431±0.45 8.151±0.97 2.117±0.63 8.111±0.92 2.026±0.51 7.562±4.86 15.519±4.83 2.288±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QA CIL_0008QA_0002 VISTA 10:59142760-59744333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004656 IMP procollagen-proline 4-dioxygenase activity
GO:0005506 IEA iron ion binding
GO:0016222 IDA procollagen-proline 4-dioxygenase complex
GO:0016702 IEA oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0018401 IDA peptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0030199 IMP collagen fibril organization
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263556 P4HA1-201 protein_coding Homo_sapiens 0 1238
ENST00000307116 P4HA1-001 protein_coding Homo_sapiens 0 1105
ENST00000373008 P4HA1-002 protein_coding Homo_sapiens 0 1238
ENST00000394890 P4HA1-202 protein_coding Homo_sapiens 0 1105
ENST00000440381 P4HA1-203 protein_coding Homo_sapiens 0 695

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