C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member T1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092857 Rhot1-004 ENSMUSG00000017686 10090 + 11:80209084-80267486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000092857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000092857 4.173±0.15 4.796±1.04 4.365±0.86 5.514±2.72 3.524±0.83 3.206±0.70 2.994±0.41 5.161±0.49 3.363±0.66 4.396±0.50 2.708±0.53 4.002±1.11 3.427±2.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VO CIL_0000VO_0002 CGP 11:80209019-80355955

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005509 IEA calcium ion binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0019725 ISS cellular homeostasis
GO:0031307 ISS integral component of mitochondrial outer membrane
GO:0047497 ISS mitochondrion transport along microtubule
GO:0097345 ISS mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333942 RHOT1-001 protein_coding Homo_sapiens 0 3395
ENST00000354266 RHOT1-004 protein_coding Homo_sapiens 0 3238
ENST00000358365 RHOT1-002 protein_coding Homo_sapiens 0 2531
ENST00000366423 RHOT1P2-001 processed_pseudogene Homo_sapiens 0 499
ENST00000394692 RHOT1-008 protein_coding Homo_sapiens 0 2495
ENST00000436571 RHOT1P3-001 processed_pseudogene Homo_sapiens 0 492
ENST00000545287 RHOT1-015 protein_coding Homo_sapiens 0 2531
ENST00000578205 RHOT1-007 nonsense_mediated_decay Homo_sapiens 0 2928
ENST00000580392 RHOT1-012 protein_coding Homo_sapiens 0 549
ENST00000580976 RHOT1-010 processed_transcript Homo_sapiens 0 680
ENST00000581031 RHOT1-005 nonsense_mediated_decay Homo_sapiens 0 2531
ENST00000581094 RHOT1-006 protein_coding Homo_sapiens 0 2527
ENST00000581148 RHOT1-013 protein_coding Homo_sapiens 0 464
ENST00000581567 RHOT1-011 retained_intron Homo_sapiens 0 313
ENST00000582468 RHOT1P1-001 processed_pseudogene Homo_sapiens 0 472
ENST00000582602 RHOT1-018 protein_coding Homo_sapiens 0 684
ENST00000583994 RHOT1-003 nonsense_mediated_decay Homo_sapiens 0 2326
ENST00000584692 RHOT1-014 nonsense_mediated_decay Homo_sapiens 0 699

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