C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093923 Cdc27-001 ENSMUSG00000020687 10090 - 11:104502745-104550483 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093923
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093923 7.338±0.35 2.033±0.40 7.305±1.61 6.457±4.25 3.461±0.52 1.521±0.55 2.086±0.83 3.134±0.46 5.118±3.76 4.755±1.49 2.413±0.22 5.332±4.18 11.011±4.06 6.954±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0002 VISTA 11:104342398-104943585
CIL_0002QR CIL_0002QR_0002 CGP 11:104502745-104595753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005680 ISS anaphase-promoting complex
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005876 IEA spindle microtubule
GO:0007091 IEA metaphase/anaphase transition of mitotic cell cycle
GO:0019903 IEA protein phosphatase binding
GO:0070979 ISS protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000066544 CDC27-001 protein_coding Homo_sapiens 0 4621
ENST00000425026 CDC27P2-001 processed_pseudogene Homo_sapiens 0 2252
ENST00000445384 CDC27P1-001 processed_pseudogene Homo_sapiens 0 933
ENST00000525495 CDC27-003 retained_intron Homo_sapiens 0 1768
ENST00000526866 CDC27-006 nonsense_mediated_decay Homo_sapiens 0 1567
ENST00000527547 CDC27-005 protein_coding Homo_sapiens 0 3674
ENST00000528748 CDC27-009 processed_transcript Homo_sapiens 0 1003
ENST00000531206 CDC27-002 protein_coding Homo_sapiens 0 4217
ENST00000532575 CDC27-008 processed_transcript Homo_sapiens 0 894
ENST00000532893 CDC27-011 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000533415 CDC27-004 nonsense_mediated_decay Homo_sapiens 0 3312
ENST00000570740 CDC27-016 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000570818 CDC27-017 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000571643 CDC27-014 protein_coding Homo_sapiens 0 584
ENST00000573502 CDC27-015 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000573550 CDC27-013 nonsense_mediated_decay Homo_sapiens 0 553
ENST00000574304 CDC27-018 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000575483 CDC27-012 protein_coding Homo_sapiens 0 1059
ENST00000575830 CDC27-020 processed_transcript Homo_sapiens 0 477
ENST00000576484 CDC27-019 nonsense_mediated_decay Homo_sapiens 0 357

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