C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: repulsive guidance molecule family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094312 Rgma-001 ENSMUSG00000070509 10090 + 7:73375520-73419899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094312 8.675±4.08 1.044±0.18 2.725±0.00 15.556±10.63 5.292±2.26 4.882±0.76 3.620±0.29 0.284±0.01 0.052±0.03 1.587±0.34 1.634±0.67 10.527±3.97 1.083±0.59 1.260±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GY CIL_0006GY_0002 CGP 7:73375520-73541746

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001934 ISO positive regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0009986 IDA cell surface
GO:0015026 IGI coreceptor activity
GO:0030509 IGI BMP signaling pathway
GO:0030510 IDA regulation of BMP signaling pathway
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329082 RGMA-001 protein_coding Homo_sapiens 0 1812
ENST00000425933 RGMA-201 protein_coding Homo_sapiens 0 1570
ENST00000542321 RGMA-007 protein_coding Homo_sapiens 0 1574
ENST00000543599 RGMA-202 protein_coding Homo_sapiens 0 1574
ENST00000554387 RGMA-005 nonsense_mediated_decay Homo_sapiens 0 1362
ENST00000555584 RGMA-012 processed_transcript Homo_sapiens 0 316
ENST00000555598 RGMA-009 protein_coding Homo_sapiens 0 451
ENST00000556658 RGMA-006 protein_coding Homo_sapiens 0 1365
ENST00000556950 RGMA-008 protein_coding Homo_sapiens 1e-27 126
ENST00000557301 RGMA-004 protein_coding Homo_sapiens 0 1574
ENST00000557420 RGMA-010 protein_coding Homo_sapiens 0 712
ENST00000557608 RGMA-011 retained_intron Homo_sapiens 0 213

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