C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094505 Dennd1b-001 ENSMUSG00000056268 10090 + 1:138967721-139171912 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000094505
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000094505 0.770±0.20 1.160±0.36 0.865±0.00 2.187±0.49 2.157±0.55 1.279±0.32 0.762±0.21 0.370±0.09 1.054±0.22 4.189±0.87 1.102±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N3 CIL_0007N3_0002 UCNEbase 1:138385353-139100523
CIL_0005VR CIL_0005VR_0002 CGP 1:138851979-139176043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0015031 IEA protein transport
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0031410 IEA cytoplasmic vesicle
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235453 DENND1B-004 protein_coding Homo_sapiens 0 1404
ENST00000294737 DENND1B-008 nonsense_mediated_decay Homo_sapiens 0 1155
ENST00000294738 DENND1B-012 processed_transcript Homo_sapiens 0 363
ENST00000367396 DENND1B-003 protein_coding Homo_sapiens 0 942
ENST00000391979 DENND1B-001 protein_coding Homo_sapiens 0 959
ENST00000422998 DENND1B-010 protein_coding Homo_sapiens 0 494
ENST00000496935 DENND1B-007 retained_intron Homo_sapiens 0 697
ENST00000620048 DENND1B-201 protein_coding Homo_sapiens 0 1687

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