C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094559 Arhgap24-001 ENSMUSG00000057315 10090 + 5:102481391-102897829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000094559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094559 3.079±0.20 0.828±0.15 2.192±0.76 0.584±0.02 1.744±0.55 1.818±0.18 0.764±0.00 1.278±0.72 1.658±0.23 0.827±0.23 1.414±0.62 0.851±0.55 0.235±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J5 CIL_0006J5_0002 CGP 5:101832956-102897936
CIL_00093A CIL_00093A_0002 VISTA 5:102073255-102675763
CIL_000530 CIL_000530_0003 CGP 5:102481391-103211334

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005925 IDA focal adhesion
GO:0007165 IEA signal transduction
GO:0030675 IMP Rac GTPase activator activity
GO:0032863 IMP activation of Rac GTPase activity
GO:0035021 IMP negative regulation of Rac protein signal transduction
GO:0035313 IMP wound healing, spreading of epidermal cells
GO:1900028 IMP negative regulation of ruffle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000084495 arhgap24-003 protein_coding Danio_rerio 0 564
ENSDART00000137809 arhgap24-001 protein_coding Danio_rerio 0 464
ENSDART00000140795 arhgap24-002 nonsense_mediated_decay Danio_rerio 7e-39 167
ENST00000249601 ARHGAP22-001 protein_coding Homo_sapiens 0 283
ENST00000264343 ARHGAP24-002 protein_coding Homo_sapiens 0 2335
ENST00000374170 ARHGAP22-006 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000374172 ARHGAP22-005 protein_coding Homo_sapiens 0 230
ENST00000395183 ARHGAP24-005 protein_coding Homo_sapiens 0 2512
ENST00000395184 ARHGAP24-001 protein_coding Homo_sapiens 0 2861
ENST00000417247 ARHGAP22-003 protein_coding Homo_sapiens 0 283
ENST00000417912 ARHGAP22-002 protein_coding Homo_sapiens 0 230
ENST00000435790 ARHGAP22-004 protein_coding Homo_sapiens 0 283
ENST00000460425 ARHGAP22-008 nonsense_mediated_decay Homo_sapiens 0 226
ENST00000489984 ARHGAP22-014 processed_transcript Homo_sapiens 5.00264e-43 178
ENST00000503995 ARHGAP24-003 protein_coding Homo_sapiens 0 846
ENST00000505856 ARHGAP24-007 retained_intron Homo_sapiens 0 243
ENST00000506421 ARHGAP24-008 processed_transcript Homo_sapiens 0 355
ENST00000509709 ARHGAP24-013 retained_intron Homo_sapiens 0 300
ENST00000514229 ARHGAP24-006 protein_coding Homo_sapiens 0 1965

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