C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095767 Etv1-001 ENSMUSG00000004151 10090 + 12:38780082-38868215 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095767 0.522±0.00 1.744±0.26 0.687±0.01 1.014±0.15 0.422±0.10 0.805±0.00 0.462±0.10 0.535±0.12 0.060±0.03 0.440±0.02 0.405±0.06 0.319±0.00 0.050±0.00 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L8 CIL_0007L8_0002 UCNEbase 12:38397629-39342373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007411 IMP axon guidance
GO:0007517 IMP muscle organ development
GO:0007638 IMP mechanosensory behavior
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242066 ETV1-201 protein_coding Homo_sapiens 0 3291
ENST00000399357 ETV1-202 protein_coding Homo_sapiens 0 2813
ENST00000403527 ETV1-008 protein_coding Homo_sapiens 0 3389
ENST00000403685 ETV1-003 protein_coding Homo_sapiens 0 1770
ENST00000405192 ETV1-005 protein_coding Homo_sapiens 0 2298
ENST00000405218 ETV1-004 protein_coding Homo_sapiens 0 4235
ENST00000405358 ETV1-007 protein_coding Homo_sapiens 0 3603
ENST00000420159 ETV1-203 protein_coding Homo_sapiens 0 3291
ENST00000421381 ETV1-011 protein_coding Homo_sapiens 0 725
ENST00000430479 ETV1-001 protein_coding Homo_sapiens 0 3808
ENST00000431887 ETV1-012 protein_coding Homo_sapiens 0 595
ENST00000433547 ETV1-014 protein_coding Homo_sapiens 0 233
ENST00000438956 ETV1-009 protein_coding Homo_sapiens 0 1208
ENST00000443137 ETV1-002 nonsense_mediated_decay Homo_sapiens 0 1600
ENST00000443608 ETV1-020 protein_coding Homo_sapiens 0 446
ENST00000460438 ETV1-019 retained_intron Homo_sapiens 0 451
ENST00000472931 ETV1-010 retained_intron Homo_sapiens 0 1430
ENST00000476355 ETV1-016 retained_intron Homo_sapiens 0 791
ENST00000476720 ETV1-022 processed_transcript Homo_sapiens 0 1086
ENST00000483075 ETV1-018 processed_transcript Homo_sapiens 0 638
ENST00000485475 ETV1-013 processed_transcript Homo_sapiens 0 431
ENST00000493831 ETV1-021 retained_intron Homo_sapiens 0 250
ENST00000497115 ETV1-017 processed_transcript Homo_sapiens 0 824

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