C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lipoxygenase homology domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096547 Loxhd1-201 ENSMUSG00000032818 10090 + 18:77281958-77442257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLiverOvaryPlacentaTestisENSMUST00000096547
Transcript ID Adipose Brain Breast Liver Ovary Placenta Testis
ENSMUST00000096547 0.004±0.00 0.005±0.00 0.020±0.01 0.002±0.00 0.074±0.05 0.002±0.00 0.432±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P7 CIL_0001P7_0002 CGP 18:77185853-77442341

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IBA calcium channel activity
GO:0007605 IMP sensory perception of sound
GO:0016020 IBA membrane
GO:0032420 IDA stereocilium
GO:0050982 IBA detection of mechanical stimulus
GO:0070588 IBA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300591 LOXHD1-002 protein_coding Homo_sapiens 0 4132
ENST00000335730 LOXHD1-001 retained_intron Homo_sapiens 0 2268
ENST00000398686 LOXHD1-008 protein_coding Homo_sapiens 0 1892
ENST00000398705 LOXHD1-007 protein_coding Homo_sapiens 0 1696
ENST00000414184 LOXHD1-010 protein_coding Homo_sapiens 0 636
ENST00000419859 LOXHD1-005 protein_coding Homo_sapiens 0 228
ENST00000441551 LOXHD1-013 protein_coding Homo_sapiens 0 7511
ENST00000536111 LOXHD1-006 nonsense_mediated_decay Homo_sapiens 0 1022
ENST00000536736 LOXHD1-201 protein_coding Homo_sapiens 0 3169
ENST00000579038 LOXHD1-015 protein_coding Homo_sapiens 0 3976
ENST00000582408 LOXHD1-014 protein_coding Homo_sapiens 0 2265

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