C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097566 Synpo-001 ENSMUSG00000043079 10090 - 18:60593973-60624336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartLiverLungOvaryPlacentaENSMUST00000097566
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Liver Lung Ovary Placenta
ENSMUST00000097566 2.571±1.16 4.956±2.14 4.774±0.38 2.827±0.93 3.703±0.00 3.765±0.72 0.626±0.14 5.430±0.05 10.900±0.00 1.598±0.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005923 IEA tight junction
GO:0015629 IDA actin cytoskeleton
GO:0030425 ISO dendrite
GO:0030865 NAS cortical cytoskeleton organization
GO:0032233 IEA positive regulation of actin filament bundle assembly
GO:0043197 NAS dendritic spine
GO:0045211 IEA postsynaptic membrane
GO:0051492 IDA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307662 SYNPO-001 protein_coding Homo_sapiens 0 1766
ENST00000394243 SYNPO-002 protein_coding Homo_sapiens 0 1766
ENST00000518872 SYNPO-005 processed_transcript Homo_sapiens 0 213
ENST00000519664 SYNPO-004 protein_coding Homo_sapiens 0 1766
ENST00000522122 SYNPO-003 protein_coding Homo_sapiens 0 1766

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