C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat (in FLII) interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097649 Lrrfip1-003 ENSMUSG00000026305 10090 + 1:91053454-91117315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000097649
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000097649 2.030±0.16 1.020±0.18 36.135±0.82 3.279±1.09 7.620±1.09 3.670±0.41 5.408±3.46 13.101±0.63 6.433±2.95 11.154±5.17 0.196±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0002H4 CIL_0002H4_0002 CGP 1:90958133-91128944
CIL_0003XV CIL_0003XV_0002 CGP 1:90998737-91170795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244815 LRRFIP1-001 protein_coding Homo_sapiens 0 734
ENST00000289175 LRRFIP1-004 protein_coding Homo_sapiens 0 867
ENST00000308482 LRRFIP1-002 protein_coding Homo_sapiens 3e-37 161
ENST00000392000 LRRFIP1-003 protein_coding Homo_sapiens 0 527
ENST00000483443 LRRFIP1-014 retained_intron Homo_sapiens 0 230
ENST00000498774 LRRFIP1P1-001 processed_pseudogene Homo_sapiens 0 734

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