C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat (in FLII) interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097650 Lrrfip1-005 ENSMUSG00000026305 10090 + 1:91053507-91128918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000097650
Transcript ID Muscle
ENSMUST00000097650 22.128±2.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0002H4 CIL_0002H4_0002 CGP 1:90958133-91128944
CIL_0003XV CIL_0003XV_0002 CGP 1:90998737-91170795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244815 LRRFIP1-001 protein_coding Homo_sapiens 5e-37 161
ENST00000289175 LRRFIP1-004 protein_coding Homo_sapiens 4e-37 161
ENST00000308482 LRRFIP1-002 protein_coding Homo_sapiens 0 1940
ENST00000392000 LRRFIP1-003 protein_coding Homo_sapiens 0 562
ENST00000464608 LRRFIP1-015 retained_intron Homo_sapiens 0 422
ENST00000468950 LRRFIP1-009 processed_transcript Homo_sapiens 0 281
ENST00000473815 LRRFIP1-007 processed_transcript Homo_sapiens 0 329
ENST00000474195 LRRFIP1-010 retained_intron Homo_sapiens 0 736
ENST00000478958 LRRFIP1-008 retained_intron Homo_sapiens 0 878
ENST00000483443 LRRFIP1-014 retained_intron Homo_sapiens 0 215
ENST00000489603 LRRFIP1-016 processed_transcript Homo_sapiens 0 409
ENST00000498774 LRRFIP1P1-001 processed_pseudogene Homo_sapiens 1e-30 139

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