C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: post-GPI attachment to proteins 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097739 Pgap1-001 ENSMUSG00000073678 10090 - 1:54472994-54557682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097739 0.737±0.29 0.336±0.05 3.444±0.02 5.933±3.10 1.382±0.49 1.332±0.37 0.421±0.03 1.768±0.41 1.116±0.66 0.939±0.08 0.283±0.07 0.570±0.14 0.990±0.70 0.585±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KE CIL_0002KE_0002 CGP 1:54472994-54926387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004518 ISS nuclease activity
GO:0005783 ISS endoplasmic reticulum
GO:0006506 IEA GPI anchor biosynthetic process
GO:0006886 IEA intracellular protein transport
GO:0007605 IMP sensory perception of sound
GO:0009880 IGI embryonic pattern specification
GO:0009948 IGI anterior/posterior axis specification
GO:0015798 ISS myo-inositol transport
GO:0016021 IEA integral component of membrane
GO:0021871 IGI forebrain regionalization
GO:0042578 ISS phosphoric ester hydrolase activity
GO:0060322 IGI head development
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354764 PGAP1-001 protein_coding Homo_sapiens 0 3491
ENST00000374738 PGAP1-011 protein_coding Homo_sapiens 0 549
ENST00000409188 PGAP1-006 protein_coding Homo_sapiens 0 1221
ENST00000409475 PGAP1-005 protein_coding Homo_sapiens 0 2320
ENST00000422444 PGAP1-003 protein_coding Homo_sapiens 0 370
ENST00000423035 PGAP1-002 nonsense_mediated_decay Homo_sapiens 0 3286
ENST00000470179 PGAP1-004 retained_intron Homo_sapiens 0 1435
ENST00000476250 PGAP1-009 retained_intron Homo_sapiens 0 244
ENST00000482051 PGAP1-010 processed_transcript Homo_sapiens 0 318
ENST00000485830 PGAP1-007 processed_transcript Homo_sapiens 0 1221

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