C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin I, cardiac 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098859 Tnni3-001 ENSMUSG00000035458 10090 - 7:4518305-4522528 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098859
Transcript ID Adrenal Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098859 1.120±0.20 1673.690±236.45 0.718±0.25 0.161±0.03 30.812±4.98 0.283±0.18 36.165±51.00 0.868±0.17 32.815±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065K CIL_00065K_0002 CGP 7:4504570-4524229
CIL_0004TD CIL_0004TD_0002 CGP 7:4518305-4532453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001570 IDA vasculogenesis
GO:0001980 IMP regulation of systemic arterial blood pressure by ischemic conditions
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 ISO cytoplasm
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006937 IDA regulation of muscle contraction
GO:0006940 IEA regulation of smooth muscle contraction
GO:0006941 IDA striated muscle contraction
GO:0007507 IDA heart development
GO:0019855 IEA calcium channel inhibitor activity
GO:0019901 IEA protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:0030016 IEA myofibril
GO:0030017 ISO sarcomere
GO:0030172 IEA troponin C binding
GO:0031014 IEA troponin T binding
GO:0032780 IEA negative regulation of ATPase activity
GO:0043292 IEA contractile fiber
GO:0046872 IEA metal ion binding
GO:0048306 IEA calcium-dependent protein binding
GO:0055010 IEA ventricular cardiac muscle tissue morphogenesis
GO:0060047 IEA heart contraction
GO:0060048 IEA cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344887 TNNI3-001 protein_coding Homo_sapiens 0 782
ENST00000585806 TNNI3-007 retained_intron Homo_sapiens 0 636
ENST00000586669 TNNI3-004 processed_transcript Homo_sapiens 0 499
ENST00000588882 TNNI3-006 protein_coding Homo_sapiens 0 686
ENST00000589864 TNNI3-008 retained_intron Homo_sapiens 0 398

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