C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354283 DDX46-002 ENSG00000145833 9606 + 5:134758804-134829296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354283
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354283 6.002±0.00 2.177±0.00 3.740±2.20 3.486±0.20 4.915±1.46 4.494±0.00 5.088±1.53 2.327±0.37 3.362±1.30 4.123±2.67 8.748±5.12 7.956±5.02 17.592±8.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_0009AP CIL_0009AP_0001 VISTA 5:134719818-135321709
CIL_0005XR CIL_0005XR_0001 CGP 5:134738501-134855133
CIL_0005XQ CIL_0005XQ_0001 CGP 5:134758779-134859737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172272 Ddx46-202 protein_coding Mus_musculus 0 3888
ENSMUST00000099479 Ddx46-201 protein_coding Mus_musculus 0 3650

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