C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099542 Casc5-201 ENSMUSG00000027326 10090 + 2:119047119-119104121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000099542
Transcript ID Bladder Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000099542 0.074±0.00 0.010±0.00 0.013±0.00 0.007±0.00 0.353±0.24 3.120±0.00 1.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070F CIL_00070F_0002 CGP 2:119034790-119105501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346991 CASC5-002 protein_coding Homo_sapiens 0 2002
ENST00000399668 CASC5-001 protein_coding Homo_sapiens 0 2002
ENST00000526913 CASC5-013 nonsense_mediated_decay Homo_sapiens 0 2002
ENST00000527044 CASC5-201 protein_coding Homo_sapiens 0 817
ENST00000528975 CASC5-005 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000532056 CASC5-006 protein_coding Homo_sapiens 9e-28 126
ENST00000532347 CASC5-010 retained_intron Homo_sapiens 0 409
ENST00000532406 CASC5-008 protein_coding Homo_sapiens 0 193
ENST00000533001 CASC5-004 retained_intron Homo_sapiens 0 817
ENST00000534204 CASC5-007 nonsense_mediated_decay Homo_sapiens 3.00004e-41 172
ENST00000614337 CASC5-003 processed_transcript Homo_sapiens 0 961

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