C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gremlin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099575 Grem1-001 ENSMUSG00000074934 10090 - 2:113746164-113758646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099575 0.014±0.00 0.051±0.03 0.041±0.01 0.634±0.31 1.474±0.44 27.237±4.13 0.232±0.03 0.146±0.11 0.026±0.02 0.502±0.08 0.042±0.05 5.964±2.45 0.034±0.02 0.021±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0002 VISTA 2:113391542-113992644
CIL_0000Z5 CIL_0000Z5_0003 CGP 2:113441289-113758646
CIL_00065T CIL_00065T_0002 CGP 2:113746164-113829121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0001525 IDA angiogenesis
GO:0001658 IGI branching involved in ureteric bud morphogenesis
GO:0002042 IDA cell migration involved in sprouting angiogenesis
GO:0002092 IDA positive regulation of receptor internalization
GO:0002689 IEA negative regulation of leukocyte chemotaxis
GO:0003257 IDA positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation
GO:0003337 IDA mesenchymal to epithelial transition involved in metanephros morphogenesis
GO:0005125 IEA cytokine activity
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0006915 IEA apoptotic process
GO:0007165 IDA signal transduction
GO:0007171 IDA activation of transmembrane receptor protein tyrosine kinase activity
GO:0007267 IMP cell-cell signaling
GO:0008284 IEA positive regulation of cell proliferation
GO:0009887 IMP organ morphogenesis
GO:0009954 IMP proximal/distal pattern formation
GO:0009986 IDA cell surface
GO:0010717 IEA regulation of epithelial to mesenchymal transition
GO:0030199 IEA collagen fibril organization
GO:0030297 IDA transmembrane receptor protein tyrosine kinase activator activity
GO:0030308 IEA negative regulation of cell growth
GO:0030326 IMP embryonic limb morphogenesis
GO:0030502 IEA negative regulation of bone mineralization
GO:0030514 IMP negative regulation of BMP signaling pathway
GO:0033689 IEA negative regulation of osteoblast proliferation
GO:0042346 IDA positive regulation of NF-kappaB import into nucleus
GO:0043184 IPI vascular endothelial growth factor receptor 2 binding
GO:0043395 TAS heparan sulfate proteoglycan binding
GO:0043542 IDA endothelial cell migration
GO:0045766 IMP positive regulation of angiogenesis
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046851 IEA negative regulation of bone remodeling
GO:0048018 IPI receptor agonist activity
GO:0048263 IEA determination of dorsal identity
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0051893 IDA regulation of focal adhesion assembly
GO:0051973 IEA positive regulation of telomerase activity
GO:0060394 IEA negative regulation of pathway-restricted SMAD protein phosphorylation
GO:0060676 IDA ureteric bud formation
GO:0061098 IDA positive regulation of protein tyrosine kinase activity
GO:0090027 IEA negative regulation of monocyte chemotaxis
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway
GO:0090190 IDA positive regulation of branching involved in ureteric bud morphogenesis
GO:0090191 IDA negative regulation of branching involved in ureteric bud morphogenesis
GO:0090291 IEA negative regulation of osteoclast proliferation
GO:1900086 IDA positive regulation of peptidyl-tyrosine autophosphorylation
GO:1900155 IEA negative regulation of bone trabecula formation
GO:1900158 IEA negative regulation of bone mineralization involved in bone maturation
GO:2000273 IDA positive regulation of receptor activity
GO:2000727 IDA positive regulation of cardiac muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300177 GREM1-201 protein_coding Homo_sapiens 0 870
ENST00000322805 GREM1-202 protein_coding Homo_sapiens 0 564
ENST00000560830 GREM1-002 protein_coding Homo_sapiens 0 564
ENST00000622074 GREM1-001 protein_coding Homo_sapiens 0 870

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