C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000430889 HOXC4-003 ENSG00000198353 9606 + 12:54053877-54056030 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000430889
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000430889 5.302±0.00 0.083±0.00 1.700±1.10 2.081±0.00 0.051±0.00 0.049±0.00 0.377±0.00 9.447±5.26 1.909±0.42 4.216±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048562 IEA embryonic organ morphogenesis
GO:0051216 IEA cartilage development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100164 Hoxc4-002 protein_coding Mus_musculus 0 1716
ENSMUST00000165375 Hoxc4-001 protein_coding Mus_musculus 0 880
ENSDART00000103132 hoxc4a-001 protein_coding Danio_rerio 0 272
ENSDART00000082472 hoxc3a-201 protein_coding Danio_rerio 0.000000000006 77
ENSDART00000082473 hoxc3a-001 protein_coding Danio_rerio 0.000000000006 77
ENSDART00000154825 hoxc3a-004 protein_coding Danio_rerio 0.000000000006 77
ENSMUST00000085591 Pdx1-001 protein_coding Mus_musculus 0.0000000003 71

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