C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC030867
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100392 BC030867-002 ENSMUSG00000034773 10090 + 11:102248882-102265187 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100392
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100392 0.550±0.45 0.152±0.06 0.080±0.03 1.453±1.19 0.265±0.10 0.712±0.17 0.050±0.01 0.095±0.06 3.099±3.32 0.118±0.05 0.031±0.01 1.924±0.78 2.165±1.19 11.231±5.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187
CIL_0005J3 CIL_0005J3_0002 CGP 11:102248882-102279462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245382 C17orf53-003 protein_coding Homo_sapiens 0 381
ENST00000319977 C17orf53-002 protein_coding Homo_sapiens 0 830
ENST00000585683 C17orf53-001 protein_coding Homo_sapiens 0 843
ENST00000588073 C17orf53-005 retained_intron Homo_sapiens 0 484

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